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q-score filtering not working

Open sovp opened this issue 6 years ago • 1 comments

when I use the --min_mean_q option, no filtering is done. All the reads are just passed to the new file.

sovp avatar Nov 28 '18 11:11 sovp

Mean quality score Read mean qualities are converted to a z-score and scaled to the range 0-100 to make the mean quality score. This means that the read with the worst mean quality in the input set will get a mean quality score of 0 and the read with the best mean quality will get a mean quality score of 100.

See Answer --> https://github.com/rrwick/Filtlong/issues/18#issuecomment-526209403

bazante1 avatar Nov 26 '19 10:11 bazante1