compilation error:

[geboro]

Working under Ubuntu 16.04 and following the installation instructions for Ubuntu. The build crashers with a "collect2: error: ld returned 1 exit status" and undefined references. I understand this could be typos in the code. I also ran a "make clean" + "make" with the same result. Below is the last part of the screen output (just before failing):

g++ -Wl,-O1 -Wl,-rpath,/home/gbonilla/Software/BioTools/Anaconda/lib -o Bandage main.o settings.o globals.o graphlayoutworker.o debruijnnode.o debruijnedge.o graphicsitemnode.o graphicsitemedge.o mainwindow.o graphicsviewzoom.o settingsdialog.o mygraphicsview.o mygraphicsscene.o aboutdialog.o enteroneblastquerydialog.o blasthit.o blastqueries.o blastsearchdialog.o infotextwidget.o assemblygraph.o verticalscrollarea.o myprogressdialog.o nodewidthvisualaid.o verticallabel.o load.o image.o commoncommandlinefunctions.o mytablewidget.o buildblastdatabaseworker.o colourbutton.o blastquery.o runblastsearchworker.o blastsearch.o path.o pathspecifydialog.o graphlocation.o tablewidgetitemint.o tablewidgetitemdouble.o tablewidgetitemshown.o memory.o querypathspushbutton.o querypathsdialog.o blastquerypath.o blasthitfiltersdialog.o scinot.o changenodenamedialog.o querypathsequencecopybutton.o querypaths.o info.o reduce.o Graph.o GraphAttributes.o FMMMLayout.o geometry.o ClusterGraphAttributes.o FruchtermanReingold.o NMM.o GmlParser.o simple_graph_alg.o basic.o XmlParser.o String.o Hashing.o PoolMemoryAllocator.o GraphCopy.o CombinatorialEmbedding.o OgmlParser.o ClusterGraph.o Math.o EdgeAttributes.o NodeAttributes.o MAARPacking.o Multilevel.o numexcept.o Set.o Ogml.o DinoXmlParser.o DinoXmlScanner.o DinoTools.o DinoLineBuffer.o System.o QuadTreeNM.o QuadTreeNodeNM.o Constraint.o MultilevelGraph.o graphinfodialog.o tablewidgetitemname.o changenodedepthdialog.o qrc_images.o moc_graphlayoutworker.o moc_mainwindow.o moc_graphicsviewzoom.o moc_settingsdialog.o moc_mygraphicsview.o moc_mygraphicsscene.o moc_aboutdialog.o moc_enteroneblastquerydialog.o moc_blastquery.o moc_blastsearchdialog.o moc_infotextwidget.o moc_assemblygraph.o moc_verticalscrollarea.o moc_myprogressdialog.o moc_nodewidthvisualaid.o moc_verticallabel.o moc_mytablewidget.o moc_buildblastdatabaseworker.o moc_colourbutton.o moc_runblastsearchworker.o moc_pathspecifydialog.o moc_querypathspushbutton.o moc_querypathsdialog.o moc_blasthitfiltersdialog.o moc_changenodenamedialog.o moc_querypathsequencecopybutton.o moc_graphinfodialog.o moc_changenodedepthdialog.o -L/usr/lib -lQt5Svg -L/home/gbonilla/Software/BioTools/Anaconda/lib -lQt5Widgets -lQt5Gui -lQt5Core -lGL -lpthread ClusterGraphAttributes.o: In function void std::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_construct<char*>(char*, char*, std::forward_iterator_tag) [clone .isra.87]': ClusterGraphAttributes.cpp:(.text+0x109): undefined reference to std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)' ClusterGraphAttributes.o: In function ogdf::ClusterGraphAttributes::writeOGML(std::ostream&)': ClusterGraphAttributes.cpp:(.text+0x7404): undefined reference to VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >' ClusterGraphAttributes.cpp:(.text+0x7429): undefined reference to vtable for std::__cxx11::basic_ostringstream<char, std::char_traits, std::allocator >' ClusterGraphAttributes.cpp:(.text+0x7481): undefined reference to vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >' ClusterGraphAttributes.cpp:(.text+0x74aa): undefined reference to vtable for std::__cxx11::basic_stringbuf<char, std::char_traits, std::allocator >' ClusterGraphAttributes.cpp:(.text+0x7564): undefined reference to vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >' ClusterGraphAttributes.cpp:(.text+0x75bc): undefined reference to vtable for std::__cxx11::basic_ostringstream<char, std::char_traits, std::allocator >' ClusterGraphAttributes.cpp:(.text+0x75e5): undefined reference to vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >' ClusterGraphAttributes.cpp:(.text+0x82c3): undefined reference to std::__cxx11::basic_string<char, std::char_traits, std::allocator >::swap(std::__cxx11::basic_string<char, std::char_traits, std::allocator >&)' ClusterGraphAttributes.cpp:(.text+0x840a): undefined reference to vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >' ClusterGraphAttributes.cpp:(.text+0x8423): undefined reference to vtable for std::__cxx11::basic_ostringstream<char, std::char_traits, std::allocator >' ClusterGraphAttributes.cpp:(.text+0x8435): undefined reference to vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >' ClusterGraphAttributes.cpp:(.text+0x847e): undefined reference to VTT for std::__cxx11::basic_ostringstream<char, std::char_traits, std::allocator >' ClusterGraphAttributes.cpp:(.text+0x84ba): undefined reference to vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >' ClusterGraphAttributes.cpp:(.text+0x84d3): undefined reference to vtable for std::__cxx11::basic_ostringstream<char, std::char_traits, std::allocator >' ClusterGraphAttributes.cpp:(.text+0x84e5): undefined reference to vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >' ClusterGraphAttributes.cpp:(.text+0x8936): undefined reference to std::__cxx11::basic_string<char, std::char_traits, std::allocator >::swap(std::__cxx11::basic_string<char, std::char_traits, std::allocator >&)' ClusterGraphAttributes.cpp:(.text+0x89a6): undefined reference to std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)' ClusterGraphAttributes.cpp:(.text+0x89d2): undefined reference to std::__cxx11::basic_ostringstream<char, std::char_traits, std::allocator >::~basic_ostringstream()' ClusterGraphAttributes.cpp:(.text+0x89da): undefined reference to std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()' ClusterGraphAttributes.o: In function std::__cxx11::basic_stringbuf<char, std::char_traits, std::allocator >::~basic_stringbuf()': ClusterGraphAttributes.cpp:(.text._ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev[_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED5Ev]+0x3): undefined reference to vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >' ClusterGraphAttributes.o: In function std::__cxx11::basic_stringbuf<char, std::char_traits, std::allocator >::~basic_stringbuf()': ClusterGraphAttributes.cpp:(.text._ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev[_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED5Ev]+0x3): undefined reference to vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >' NMM.o: In function ogdf::NMM::init_binko(int)': NMM.cpp:(.text+0x709d): undefined reference to __cxa_throw_bad_array_new_length' NMM.o: In function ogdf::NMM::form_multipole_expansion_of_subtree(ogdf::NodeArrayogdf::NodeAttributes&, ogdf::QuadTreeNM&, ogdf::Listogdf::QuadTreeNodeNM*&)': NMM.cpp:(.text+0xb0e4): undefined reference to __cxa_throw_bad_array_new_length' NMM.cpp:(.text+0xb0fc): undefined reference to __cxa_throw_bad_array_new_length' simple_graph_alg.o: In function ogdf::topologicalNumbering(ogdf::Graph const&, ogdf::NodeArray<int>&)': simple_graph_alg.cpp:(.text+0x20da): undefined reference to __cxa_throw_bad_array_new_length' simple_graph_alg.o: In function ogdf::strongComponents(ogdf::Graph const&, ogdf::NodeArray<int>&)': simple_graph_alg.cpp:(.text+0x3473): undefined reference to __cxa_throw_bad_array_new_length' simple_graph_alg.o:simple_graph_alg.cpp:(.text+0x3783): more undefined references to __cxa_throw_bad_array_new_length' follow collect2: error: ld returned 1 exit status Makefile:603: recipe for target 'Bandage' failed make: *** [Bandage] Error 1

[apblair]

I am having the same issue on my Ubuntu 16.04 vm. Have you been able to fix this?