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is the tree built from bionj_tree.R tree/distances.phylip tree/tree.newick a phylogeny or cladogram??
Hi
I use fastANI distance matrix, first converted to fastani.phylip using following code,
pairwise_identities_to_distance_matrix.py --max_dist 0.2 tree/fastani_output > tree/fastani.phylip
then creates a tree with
bionj_tree.R tree/distances.phylip tree/tree.newic
could this tree be considered as phylogenetic tree or just cladogram?? because the original data fastANI pairwise distance values.
Thank you so much for any help?
Best, Limin