modbamtools
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modbamtools plot command will append on more output if the same prefix is used
modbamtools plot command will append on more output if the same prefix is used. This could cause major issues when trying to optimize a plot.
Example - these two commands were run consecutively
modbamtools plot --batch genes.bed -c --prefix test_batch_hp_removed_gm12878_batch --samples GM12878 --out . hp_removed_gm12878_ul_sup_megalodon_chr20.bam
modbamtools plot --batch genes.bed -c --prefix test_batch_hp_removed_gm12878_batch --samples GM12878 --out . hp_removed_gm12878_ul_sup_megalodon_chr20.bam
It leads to those three loci plotted back-to-back in the HTML file.