fastq-dl

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Perl version control

5

The current version of Perl associated with fastq-dl is 5.22.0 which conflicts with the current version of Bactopia's (v3.0.0) Perl version which is 5.26.0. I ran into this conflict when...

pooser

prefer sra normalized format over sra lite

7

I've hit an odd issue where `fastq-dl` pulls FASTQs without issue, but they are in SRA Lite format instead of the typical SRA Normalized format. FASTQs in SRA Lite format...

kapsakcj

Bumps [certifi](https://github.com/certifi/python-certifi) from 2023.5.7 to 2023.7.22. Commits 8fb96ed 2023.07.22 afe7722 Bump actions/setup-python from 4.6.1 to 4.7.0 (#230) 2038739 Bump dessant/lock-threads from 3.0.0 to 4.0.1 (#229) 44df761 Hash pin Actions and...

dependabot[bot]

citation

1

Hi Robert, I'm using fastq-dl to download a bunch of Fastqs for some benchmarking - it's so good! Question about citation - should I just refer to the GitHub? George

gbouras13