rosshandler

diff_exp not working after updating wot

9

Hi WOT developers, I am experiencing some problems with diff_exp after updating wot. I am able to compute the transport maps and the fates matrices but I now get an...

How do you compute the log odds of two trajectories?

3

Hi WOT team, I am trying to compute the log odds in the same way you did it for the paper. It sounds trivial but I don't get it from...

Trajectory tool works fine but trajectory trend fails

1

Hi WOT team, Thanks for this awesome tool. I am finding a problem when computing the trajectory trends after running the trajectory tool with no issues (at least the output...

Error: tensorflow/core/framework/cpu_allocator_impl.cc:81: Allocation of exceeds 10% of system memory

5

Dear cellassign team, I am trying to run cellassign in a dataset of a bit more than 400,000 cells. I was able to do some tests with subsets of 100,000...

BiocParallel errors when running regionMat()

1

Hello, Thank you for making this tool. I would like to use derfinder starting from a set of bam files. I have loaded the files using load coverage and it...

Interpreting prior means of pseudotime plot

1

Dear John and developers, I find your tool super interesting. I have a single cell data set with 12 time points that I managed to reduce to 4 thousand cells...

missing pseudochr.fasta.gz for Leishmania in Public server (is Companion still supported)

1

Dear Companion team, I would like to use your public server for annotating some assemblies from leishmania that I have generated. However, it seems to me that the server does...