fortpy
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Published
20 hours ago •
rosenbrockc
rosenbrockc
Error thrown by unit test isn't string
When I run my unit tests, I get an error.
(BZI) src$ runtests.py .
subroutine symmetryReduceKpointList
COPY /users/jj/codes/kgridgen/src/generatekpoints.f90
CASES:
Wrote Test: kpts-sc
Wrote Test: wts-sc
Running for compilers: gfortran
Executing kpts-sc.x in /Users/jj/Codes/kgridGen/unittests/kpointgeneration.symmetryReduceKpointList.g49/tests
Running vasp8: 94%|███████████████████████████████████████████████████████████████████████████████████████████████████▍ | 15/16 [00:37<00:02, 2.49s/it]Traceback (most recent call last):
File "/Users/jj/.virtualenvs/BZI/bin/runtests.py", line 184, in <module>
do_testing(args)
File "/Users/jj/.virtualenvs/BZI/bin/runtests.py", line 55, in do_testing
result = t.runall(c)
File "/Users/jj/.virtualenvs/BZI/lib/python3.6/site-packages/fortpy/testing/tester.py", line 638, in runall
oneresult = self._run_single(identifier, testid, source)
File "/Users/jj/.virtualenvs/BZI/lib/python3.6/site-packages/fortpy/testing/tester.py", line 654, in _run_single
self._run_exec(identifier, testid, result)
File "/Users/jj/.virtualenvs/BZI/lib/python3.6/site-packages/fortpy/testing/tester.py", line 720, in _run_exec
self.writer(identifier))
File "/Users/jj/.virtualenvs/BZI/lib/python3.6/site-packages/fortpy/testing/tester.py", line 796, in _run_folder
(case, start_time, code) = _execute_testpath(casepath, exepath, self.quiet, case, self.debug)
File "/Users/jj/.virtualenvs/BZI/lib/python3.6/site-packages/fortpy/testing/tester.py", line 892, in _execute_testpath
msg.err('\n '+' '.join(error))
TypeError: sequence item 0: expected str instance, bytes found
(BZI) src$
This is because the error is a list of bytes
error = [b'STOP The k-grid vectors that were passed in are linearly dependent.\n']
I was able to fix it by replacing
if len(error) > 0:
if quiet:
msg.info("With Executable at {}".format(exepath), 1)
msg.err('\n '+' '.join(error))
with
if len(error) > 0:
if quiet:
msg.info("With Executable at {}".format(exepath), 1)
try:
msg.err('\n '+' '.join(error))
except:
msg.err('\n '+' '.join(error[0].strip().decode("utf-8")))
in fortpy/testing/tester.py. I now get
runtests.py .
subroutine symmetryReduceKpointList
COPY /users/jj/codes/kgridgen/src/generatekpoints.f90
CASES:
Wrote Test: kpts-sc
Wrote Test: wts-sc
Running for compilers: gfortran
Executing kpts-sc.x in /Users/jj/Codes/kgridGen/unittests/kpointgeneration.symmetryReduceKpointList.g49/tests
Running vasp8: 85%|██████████████████████████████████████████████████████████████████████████████████████████ | 17/20 [00:37<00:06, 2.18s/it]ERROR:
S T O P T h e k - g r i d v e c t o r s t h a t w e r e p a s s e d i n a r e l i n e a r l y d e p e n d e n t .
Running vasp9: 85%|██████████████████████████████████████████████████████████████████████████████████████████ | 17/20 [00:37<00:06, 2.19s/it]ERROR:
S T O P T h e k - g r i d v e c t o r s t h a t w e r e p a s s e d i n a r e l i n e a r l y d e p e n d e n t .
Running vasp10: 85%|█████████████████████████████████████████████████████████████████████████████████████████▎ | 17/20 [00:37<00:06, 2.19s/it]ERROR:
S T O P T h e k - g r i d v e c t o r s t h a t w e r e p a s s e d i n a r e l i n e a r l y d e p e n d e n t .
Running vasp10: 100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████| 20/20 [00:37<00:00, 1.86s/it]
Checking vasp8: 75%|██████████████████████████████████████████████████████████████████████████████▊ | 15/20 [00:00<00:00, 17.69it/s]WARNING: Model output file /Users/jj/Codes/kgridGen/tests/simple_cubic/klist.out.vasp8 does not exist for case kpts-sc.vasp8
Checking vasp9: 90%|██████████████████████████████████████████████████████████████████████████████████████████████▌ | 18/20 [00:00<00:00, 21.21it/s]WARNING: Model output file /Users/jj/Codes/kgridGen/tests/simple_cubic/klist.out.vasp9 does not exist for case kpts-sc.vasp9
Checking vasp10: 90%|█████████████████████████████████████████████████████████████████████████████████████████████▌ | 18/20 [00:00<00:00, 21.21it/s]WARNING: Model output file /Users/jj/Codes/kgridGen/tests/simple_cubic/klist.out.vasp10 does not exist for case kpts-sc.vasp10
Checking vasp10: 100%|████████████████████████████████████████████████████████████████████████████████████████████████████████| 20/20 [00:00<00:00, 23.56it/s]
Executing wts-sc.x in /Users/jj/Codes/kgridGen/unittests/kpointgeneration.symmetryReduceKpointList.g49/tests
Running 10: 100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████| 10/10 [00:00<00:00, 62.60it/s]
Checking 10: 100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████| 10/10 [00:00<00:00, 922.25it/s]
RESULT: kpointgeneration.symmetryReduceKpointList | kpts-sc | gfortran
73.91% success (73.91% common) in 406.3150 ms
RESULT: kpointgeneration.symmetryReduceKpointList | wts-sc | gfortran
100.00% success (100.00% common) in 3.5150 ms
@CI: 86.96%
Failure: exiting with code 4
(BZI) src$
This looks a bit better IMO.
if len(error) > 0:
if quiet:
msg.info("With Executable at {}".format(exepath), 1)
try:
msg.err('\n '+' '.join(error))
except:
msg.err("\n" + error[0].strip().decode("utf-8"))
(BZI) src$ runtests.py .
subroutine symmetryReduceKpointList
COPY /users/jj/codes/kgridgen/src/generatekpoints.f90
CASES:
Wrote Test: kpts-sc
Wrote Test: wts-sc
Running for compilers: gfortran
Executing kpts-sc.x in /Users/jj/Codes/kgridGen/unittests/kpointgeneration.symmetryReduceKpointList.g49/tests
Running vasp8: 85%|███████████████████████████████████████████████████████████████████████████████ | 17/20 [00:36<00:06, 2.17s/it]
ERROR:
STOP The k-grid vectors that were passed in are linearly dependent.
Running vasp9: 85%|███████████████████████████████████████████████████████████████████████████████ | 17/20 [00:36<00:06, 2.17s/it]
ERROR:
STOP The k-grid vectors that were passed in are linearly dependent.
Running vasp10: 85%|██████████████████████████████████████████████████████████████████████████████▏ | 17/20 [00:36<00:06, 2.17s/it]
ERROR:
STOP The k-grid vectors that were passed in are linearly dependent.
Running vasp10: 100%|████████████████████████████████████████████████████████████████████████████████████████████| 20/20 [00:36<00:00, 1.85s/it]
Checking vasp8: 75%|█████████████████████████████████████████████████████████████████████ | 15/20 [00:00<00:00, 17.75it/s]WARNING: Model output file /Users/jj/Codes/kgridGen/tests/simple_cubic/klist.out.vasp8 does not exist for case kpts-sc.vasp8
Checking vasp9: 90%|██████████████████████████████████████████████████████████████████████████████████▊ | 18/20 [00:00<00:00, 21.29it/s]WARNING: Model output file /Users/jj/Codes/kgridGen/tests/simple_cubic/klist.out.vasp9 does not exist for case kpts-sc.vasp9
Checking vasp10: 90%|█████████████████████████████████████████████████████████████████████████████████▉ | 18/20 [00:00<00:00, 21.29it/s]WARNING: Model output file /Users/jj/Codes/kgridGen/tests/simple_cubic/klist.out.vasp10 does not exist for case kpts-sc.vasp10
Checking vasp10: 100%|███████████████████████████████████████████████████████████████████████████████████████████| 20/20 [00:00<00:00, 23.65it/s]
Executing wts-sc.x in /Users/jj/Codes/kgridGen/unittests/kpointgeneration.symmetryReduceKpointList.g49/tests
Running 10: 100%|████████████████████████████████████████████████████████████████████████████████████████████████| 10/10 [00:00<00:00, 65.55it/s]
Checking 10: 100%|██████████████████████████████████████████████████████████████████████████████████████████████| 10/10 [00:00<00:00, 939.84it/s]
RESULT: kpointgeneration.symmetryReduceKpointList | kpts-sc | gfortran
73.91% success (73.91% common) in 390.0920 ms
RESULT: kpointgeneration.symmetryReduceKpointList | wts-sc | gfortran
100.00% success (100.00% common) in 3.3810 ms
@CI: 86.96%
Failure: exiting with code 4
(BZI) src$