spocc icon indicating copy to clipboard operation
spocc copied to clipboard

has_coords not functioning as expected

Open gmlmiller opened this issue 3 years ago • 1 comments

The has_coords argument appears to be pulling NA values in addition to actual coordinates when from = 'bison'. For example: occ('Allogona townsendiana', 'bison', limit=2000, has_coords=TRUE) returns 283 records, 150 of which have NA values for latitude and longitude.

Session Info
 setting  value                       
 version  R version 4.0.5 (2021-03-31)
 os       Windows 10 x64              
 system   x86_64, mingw32             
 ui       RStudio                     
 language (EN)                        
 collate  English_Canada.1252         
 ctype    English_Canada.1252         
 tz       America/Chicago             
 date     2021-04-30                  

- Packages ------------------------------------------------------------------------------------------------------------
 package     * version date       lib source        
 assertthat    0.2.1   2019-03-21 [1] CRAN (R 4.0.5)
 backports     1.2.1   2020-12-09 [1] CRAN (R 4.0.3)
 broom         0.7.6   2021-04-05 [1] CRAN (R 4.0.5)
 cachem        1.0.4   2021-02-13 [1] CRAN (R 4.0.5)
 callr         3.7.0   2021-04-20 [1] CRAN (R 4.0.5)
 cellranger    1.1.0   2016-07-27 [1] CRAN (R 4.0.5)
 cli           2.4.0   2021-04-05 [1] CRAN (R 4.0.5)
 colorspace    2.0-0   2020-11-11 [1] CRAN (R 4.0.5)
 conditionz    0.1.0   2019-04-24 [1] CRAN (R 4.0.5)
 crayon        1.4.1   2021-02-08 [1] CRAN (R 4.0.5)
 crul          1.1.0   2021-02-15 [1] CRAN (R 4.0.5)
 curl          4.3     2019-12-02 [1] CRAN (R 4.0.5)
 data.table    1.14.0  2021-02-21 [1] CRAN (R 4.0.5)
 DBI           1.1.1   2021-01-15 [1] CRAN (R 4.0.5)
 dbplyr        2.1.1   2021-04-06 [1] CRAN (R 4.0.5)
 desc          1.3.0   2021-03-05 [1] CRAN (R 4.0.5)
 devtools      2.4.0   2021-04-07 [1] CRAN (R 4.0.5)
 dplyr       * 1.0.5   2021-03-05 [1] CRAN (R 4.0.5)
 ellipsis      0.3.1   2020-05-15 [1] CRAN (R 4.0.5)
 fansi         0.4.2   2021-01-15 [1] CRAN (R 4.0.5)
 fastmap       1.1.0   2021-01-25 [1] CRAN (R 4.0.5)
 forcats     * 0.5.1   2021-01-27 [1] CRAN (R 4.0.5)
 fs            1.5.0   2020-07-31 [1] CRAN (R 4.0.5)
 generics      0.1.0   2020-10-31 [1] CRAN (R 4.0.5)
 ggplot2     * 3.3.3   2020-12-30 [1] CRAN (R 4.0.5)
 glue          1.4.2   2020-08-27 [1] CRAN (R 4.0.5)
 gtable        0.3.0   2019-03-25 [1] CRAN (R 4.0.5)
 haven         2.4.0   2021-04-14 [1] CRAN (R 4.0.5)
 hms           1.0.0   2021-01-13 [1] CRAN (R 4.0.5)
 httpcode      0.3.0   2020-04-10 [1] CRAN (R 4.0.5)
 httr          1.4.2   2020-07-20 [1] CRAN (R 4.0.5)
 jsonlite      1.7.2   2020-12-09 [1] CRAN (R 4.0.5)
 lattice       0.20-41 2020-04-02 [2] CRAN (R 4.0.5)
 lazyeval      0.2.2   2019-03-15 [1] CRAN (R 4.0.5)
 lifecycle     1.0.0   2021-02-15 [1] CRAN (R 4.0.5)
 lubridate     1.7.10  2021-02-26 [1] CRAN (R 4.0.5)
 magrittr      2.0.1   2020-11-17 [1] CRAN (R 4.0.5)
 mapproj       1.2.7   2020-02-03 [1] CRAN (R 4.0.5)
 maps          3.3.0   2018-04-03 [1] CRAN (R 4.0.5)
 memoise       2.0.0   2021-01-26 [1] CRAN (R 4.0.5)
 modelr        0.1.8   2020-05-19 [1] CRAN (R 4.0.5)
 munsell       0.5.0   2018-06-12 [1] CRAN (R 4.0.5)
 oai           0.3.0   2019-09-07 [1] CRAN (R 4.0.5)
 pillar        1.6.0   2021-04-13 [1] CRAN (R 4.0.5)
 pkgbuild      1.2.0   2020-12-15 [1] CRAN (R 4.0.5)
 pkgconfig     2.0.3   2019-09-22 [1] CRAN (R 4.0.5)
 pkgload       1.2.1   2021-04-06 [1] CRAN (R 4.0.5)
 plyr          1.8.6   2020-03-03 [1] CRAN (R 4.0.5)
 prettyunits   1.1.1   2020-01-24 [1] CRAN (R 4.0.5)
 processx      3.5.1   2021-04-04 [1] CRAN (R 4.0.5)
 ps            1.6.0   2021-02-28 [1] CRAN (R 4.0.5)
 purrr       * 0.3.4   2020-04-17 [1] CRAN (R 4.0.5)
 R6            2.5.0   2020-10-28 [1] CRAN (R 4.0.5)
 rbison        1.0.0   2020-06-08 [1] CRAN (R 4.0.5)
 Rcpp          1.0.6   2021-01-15 [1] CRAN (R 4.0.5)
 readr       * 1.4.0   2020-10-05 [1] CRAN (R 4.0.5)
 readxl        1.3.1   2019-03-13 [1] CRAN (R 4.0.5)
 rebird        1.2.0   2021-01-27 [1] CRAN (R 4.0.5)
 remotes       2.3.0   2021-04-01 [1] CRAN (R 4.0.5)
 reprex        2.0.0   2021-04-02 [1] CRAN (R 4.0.5)
 rgbif         3.5.2   2021-01-27 [1] CRAN (R 4.0.5)
 ridigbio      0.3.5   2017-02-16 [1] CRAN (R 4.0.5)
 rlang         0.4.10  2020-12-30 [1] CRAN (R 4.0.5)
 rprojroot     2.0.2   2020-11-15 [1] CRAN (R 4.0.5)
 rstudioapi    0.13    2020-11-12 [1] CRAN (R 4.0.5)
 rvertnet      0.8.0   2020-01-29 [1] CRAN (R 4.0.5)
 rvest         1.0.0   2021-03-09 [1] CRAN (R 4.0.5)
 scales        1.1.1   2020-05-11 [1] CRAN (R 4.0.5)
 sessioninfo   1.1.1   2018-11-05 [1] CRAN (R 4.0.5)
 sp            1.4-5   2021-01-10 [1] CRAN (R 4.0.5)
 spocc       * 1.2.0   2021-01-05 [1] CRAN (R 4.0.5)
 stringi       1.5.3   2020-09-09 [1] CRAN (R 4.0.3)
 stringr     * 1.4.0   2019-02-10 [1] CRAN (R 4.0.5)
 testthat      3.0.2   2021-02-14 [1] CRAN (R 4.0.5)
 tibble      * 3.1.0   2021-02-25 [1] CRAN (R 4.0.5)
 tidyr       * 1.1.3   2021-03-03 [1] CRAN (R 4.0.5)
 tidyselect    1.1.0   2020-05-11 [1] CRAN (R 4.0.5)
 tidyverse   * 1.3.1   2021-04-15 [1] CRAN (R 4.0.5)
 tinytex       0.31    2021-03-30 [1] CRAN (R 4.0.5)
 triebeard     0.3.0   2016-08-04 [1] CRAN (R 4.0.5)
 urltools      1.7.3   2019-04-14 [1] CRAN (R 4.0.5)
 usethis       2.0.1   2021-02-10 [1] CRAN (R 4.0.5)
 utf8          1.2.1   2021-03-12 [1] CRAN (R 4.0.5)
 uuid          0.1-4   2020-02-26 [1] CRAN (R 4.0.3)
 vctrs         0.3.7   2021-03-29 [1] CRAN (R 4.0.5)
 wellknown     0.7.2   2021-01-07 [1] CRAN (R 4.0.5)
 whisker       0.4     2019-08-28 [1] CRAN (R 4.0.5)
 withr         2.4.2   2021-04-18 [1] CRAN (R 4.0.5)
 wk            0.4.1   2021-03-16 [1] CRAN (R 4.0.5)
 xfun          0.22    2021-03-11 [1] CRAN (R 4.0.5)
 xml2          1.3.2   2020-04-23 [1] CRAN (R 4.0.5)

gmlmiller avatar Apr 30 '21 16:04 gmlmiller

thanks for your question @gmlmiller !

see the parameter description for has_coords https://docs.ropensci.org/spocc/reference/occ.html#arguments it does not support BISON - you can remove the NA's after getting the data back as an alternative

sckott avatar May 03 '21 21:05 sckott