rcrossref
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ropensci
Cannot retrieve works ("application/json;charset=UTF-8" is not TRUE)
Session Info
> sessionInfo()
R version 4.1.1 (2021-08-10)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur 10.16
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rcrossref_1.1.0
loaded via a namespace (and not attached):
[1] Rcpp_1.0.8.3 compiler_4.1.1 pillar_1.6.2 later_1.3.0 plyr_1.8.7 tools_4.1.1 digest_0.6.28 jsonlite_1.7.2 lifecycle_1.0.1 tibble_3.1.4 pkgconfig_2.0.3
[12] rlang_0.4.11 shiny_1.7.0 DBI_1.1.1 crul_1.2.0 curl_4.3.2 fastmap_1.1.0 xml2_1.3.2 stringr_1.4.0 dplyr_1.0.7 generics_0.1.0 vctrs_0.3.8
[23] htmlwidgets_1.5.4 triebeard_0.3.0 DT_0.19 tidyselect_1.1.1 glue_1.4.2 httpcode_0.3.0 R6_2.5.1 fansi_0.5.0 purrr_0.3.4 magrittr_2.0.1 urltools_1.7.3
[34] promises_1.2.0.1 ellipsis_0.3.2 htmltools_0.5.2 assertthat_0.2.1 mime_0.11 xtable_1.8-4 httpuv_1.6.3 utf8_1.2.2 stringi_1.7.4 miniUI_0.1.1.1 crayon_1.4.1
When I attempt to run cr_works(), it fails with the following error:
> cr_works(dois = "10.1371/journal.pone.0228782")
Error in cr_GET(endpoint = path, args, todf = FALSE, ...) :
res$response_headers$`content-type` == "application/json;charset=UTF-8" is not TRUE
No DOI or URL works. Did CrossRef change their API?
Same here...
> cr_cn(dois = "10.1371/journal.pone.0112608", format = "text", style = "apa")
Error in cr_GET(endpoint = sprintf("works/%s/agency", x), args = list(), :
res$response_headers$`content-type` == "application/json;charset=UTF-8" is not TRUE
I added my mail to ~/.Renviron
R version 4.2.1 (2022-06-23)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Linux Mint 20.3
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=ru_RU.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rcrossref_1.1.0.99 forcats_0.5.1 stringr_1.4.0 dplyr_1.0.9 purrr_0.3.4 readr_2.1.2
[7] tidyr_1.2.0 tibble_3.1.8 ggplot2_3.3.6 tidyverse_1.3.1
loaded via a namespace (and not attached):
[1] Rcpp_1.0.9 lubridate_1.8.0 prettyunits_1.1.1 ps_1.7.1 rprojroot_2.0.3 assertthat_0.2.1
[7] digest_0.6.29 utf8_1.2.2 mime_0.12 R6_2.5.1 cellranger_1.1.0 plyr_1.8.7
[13] backports_1.4.1 reprex_2.0.1 httr_1.4.3 pillar_1.8.0 rlang_1.0.4 curl_4.3.2
[19] readxl_1.4.0 rstudioapi_0.13 miniUI_0.1.1.1 callr_3.7.0 DT_0.23 urltools_1.7.3
[25] htmlwidgets_1.5.4 triebeard_0.3.0 munsell_0.5.0 shiny_1.7.2 broom_0.8.0 compiler_4.2.1
[31] httpuv_1.6.5 modelr_0.1.8 pkgconfig_2.0.3 pkgbuild_1.3.1 htmltools_0.5.3 tidyselect_1.1.2
[37] httpcode_0.3.0 fansi_1.0.3 crayon_1.5.1 tzdb_0.3.0 dbplyr_2.2.0 withr_2.5.0
[43] later_1.3.0 crul_1.2.0 grid_4.2.1 jsonlite_1.8.0 xtable_1.8-4 gtable_0.3.0
[49] lifecycle_1.0.1 DBI_1.1.3 magrittr_2.0.3 scales_1.2.0 cli_3.3.0 stringi_1.7.8
[55] remotes_2.4.2 fs_1.5.2 promises_1.2.0.1 xml2_1.3.3 ellipsis_0.3.2 generics_0.1.3
[61] vctrs_0.4.1 tools_4.2.1 glue_1.6.2 hms_1.1.1 processx_3.6.1 fastmap_1.1.0
[67] colorspace_2.0-3 sessioninfo_1.2.2 rvest_1.0.2 haven_2.5.0
The development version (1.1.0.99) is working for me. The one on CRAN (1.1.0) is giving me the same error that @BEFH and @agricolamz reported.
I had this issue and tracked it down to a problem with capitalization of "UTF" not matching what was expected ("utf"). But it looks like it's fixed in the development version on GitHub
Hi All, I am having the same issue using the CRAN 1.1.0 version. Can you point me to the development version that is working? I tried devtools::install_github("ropensci/rcrossref@api_update") with no luck. Where are the development versions listed?
If you just use devtools::install_github("ropensci/rcrossref") it will install the current development version.
@njahn82, it might be good to make a patch release for CRAN if this fix isn't in the CRAN version yet
if this fix isn't in the CRAN version yet
This fix isn't on CRAN yet. See also https://github.com/ropensci/rcrossref/issues/221#issuecomment-999800245
Related to a CRAN update, the package is currently failing CRAN checks, so it is in risk of being archived
https://cran.r-project.org/web/checks/check_results_rcrossref.html
