fishbaseapi

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when doing ```go func main() { url := "https://fishbase.ropensci.org/species?limit=10&offset=0" req, _ := http.NewRequest("GET", url, nil) req.Header.Add("Accept", "application/vnd.ropensci.v6+json") res, _ := http.DefaultClient.Do(req) defer res.Body.Close() body, _ := io.ReadAll(res.Body) fmt.Println(string(body)) } ```...

shi-rudo

Bumps [rack](https://github.com/rack/rack) from 2.2.3 to 2.2.6.4. Changelog Sourced from rack's changelog. Changelog All notable changes to this project will be documented in this file. For info on how to format...

dependabot[bot]

Bumps [activerecord](https://github.com/rails/rails) from 6.1.3 to 6.1.7.1. Release notes Sourced from activerecord's releases. v6.1.7.1 Active Support Avoid regex backtracking in Inflector.underscore [CVE-2023-22796] Active Model No changes. Active Record Make sanitize_as_sql_comment more...

dependabot[bot]

Bumps [sinatra](https://github.com/sinatra/sinatra) from 2.1.0 to 2.2.3. Changelog Sourced from sinatra's changelog. 2.2.3 / 2022-11-25 Fix: Escape filename in the Content-Disposition header. #1841 by Kunpei Sakai Fix: fixed ReDoS for Rack::Protection::IPSpoofing....

dependabot[bot]

Search for term anywhere in database

11

@sckott I'm wondering if we can construct an endpoint to search for a term anywhere in the database. Given how disorganized the FishBase SQL is, it can be pretty hard...

cboettig

including https://fishbaseapi.readme.io/docs/getting-started metadata and routes

sckott

Fishbase license/copyright

8

- [ ] copy/paste their copyright and/or license info on the fishbaseapi docs - and in R pkg docs - [ ] Rainer says they expect commercial users to pay...

sckott

so like ```json { "version": "v4", "count": 1000, "returned": 10, "data": [ { ... } ], "error": null } ```

sckott

Duplicates in genera table

1

E.g., ``` r library("RMySQL") library("dplyr") conn % .$GEN_NAME ``` ``` r length(gens) #> [1] 26261 length(unique(gens)) #> [1] 26164 ``` ``` r (lanceola % filter(GEN_NAME == "Lanceola") %>% collect()) lanceola...

sckott

Improving the docs

1

I'm not sure that it was a good idea to put the docs as part of the API (well, I think that still can be useful, but not nearly as...

cboettig