CoordinateCleaner
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ropensci
Automated flagging of common spatial and temporal errors in biological and palaeontological collection data, for the use in conservation, ecology and palaeontology.
I think this is a great package, and what I want is easy to implement in some other way so I'm just being lazy - but it would be nice...
Dear all, I’ve just started using CoordinateCleaner to flag and remove problematic records from the Gbif package. So I apologize in advance if my following comment is due to my...
I didn't manage to use the report argument of the function `clean_coordinates`. I'm using version 2.0-18 and the argument value is set to "spatialvalid" (although it would be nice to...
I'm running into a weird issue when running clean_coordinates. Reproducible example below. I have a data set with an obvious outlier. The basic workflow is 1. Get data from GBIF,...
Same problem here. I just used the example given for Panthera leo (https://ropensci.github.io/CoordinateCleaner/articles/Cleaning_GBIF_data_with_CoordinateCleaner.html) and got the same error message: `library(countrycode)` `library(CoordinateCleaner)` `library(dplyr)` ``` library(ggplot2) library(rgbif) library(sp) ``` #obtain data from...
```R cc_cen % cc_cen( lon = "decimallongitude", lat = "decimallatitude", buffer = 2000, value = "clean") ``` > error in evaluating the argument 'obj' in selecting a method for function...
There are several known default values for coordinate uncertainty in meters. 301 : Geolocate Default (often a country centroid) 3036 : Geolocate Default 999 : Default found in a few...
:wave: @azizka I was looking for https://docs.ropensci.org/CoordinateCleaner/articles/Background_comparison_other_software.html since it was such a good example of comparison. Where did it go?
Since the vignette depends on working internet ressources and will fail if those are broken, avoid vignette rebuilding on CRAN
## Background GBIF has recently begun publishing records from a metagenomics publisher MGnify. https://www.gbif.org/publisher/ab733144-7043-4e88-bd4f-fca7bf858880 Typically these records can be bacteria or other microbes. Often however these records can be trace...