Liezl Maree

Results 136 comments of Liezl Maree

Hi @Lateef-Saheed, I am glad you are using GPT. The provided answer is the way you would read in a SLEAP dataset - given it is stored in an `.slp`...

Hi @phragmosis, While we have updated dependency ranges and added both conda packages and unit testing for Macs in the last release 1.3.1, there are still some Mac-specific bugs ([see...

Hi @amblypatty, I am having a bit of trouble replicating the issue. Are you able/willing to share your troublesome project (slp, videos/images) with [[email protected]](mailto:[email protected]) for troubleshooting purposes? Thanks for writing...

Hi @amblypatty, The problem --- It seems that your project does indeed have two skeletons in it: ![image](https://user-images.githubusercontent.com/38435167/212201021-b1b7aaaa-16c0-4bad-8172-3a8c26e0025a.png) which was caused by [an old bug](https://github.com/talmolab/sleap/issues/713) that seems to keep haunting...

The script to remove redundant skeletons: #### WARNING(S) I have not tested the case where multiple skeletons are actually used by instances. Always save to an `output_path` different from the...

Flagging this suspicious piece of code (called in `Labels.finish_complex_merge`) for further inspection: https://github.com/talmolab/sleap/blob/833c2d5bdcf4cfef4e0adc7569b8e2245494a8fa/sleap/io/dataset.py#L469-L479

``` Ordered by: cumulative time List reduced from 5387 to 100 due to restriction ncalls tottime percall cumtime percall filename:lineno(function) 1 0.000 0.000 11.447 11.447 runner.py:111(pytest_runtest_protocol) 17/11 0.000 0.000 11.447...

The culprit ended up being that we cache frames in `SingleImageVideo` to help with switching frames in the GUI (for high resolution images). However, with 400k labeled frames being cached...

Hi @amblypatty, Originally, we thought this error might be caused by the plotting just the visualizations (confidence maps overlaid on instances) during training; however, after tracking down the error, we...