romainGuiet

MorphoLibJ as a dependency versions conflict

12

Hi @dlegland , I'm contacting you to know what is the best solution to add MorphoLibJ as a dependency to our [EasyXT-Fiji](https://github.com/BIOP/EasyXT-FIJI). I found in this repo releases the [v1.4.3](https://github.com/ijpb/MorphoLibJ/releases/tag/v1.4.3)...

adds cropLabel variation to get calibration including origin in the cropped image

3

it might not be the best way of doing it, it's just a POC regarding this [issue](https://github.com/ijpb/MorphoLibJ/issues/63)

croplabel() , set pixel/voxel size and origin of the cropped image

1

Dear @MorphoLibJ team, Would it be possible to add the pixel/voxel size and the origin of the cropped image (maybe via Calibration ? ) https://github.com/ijpb/MorphoLibJ/blob/59b691fb8fa457e2fad8d5eb57c82c0fe6115e67/src/main/java/inra/ijpb/label/LabelImages.java#L329 This would ease a lot...

Points in range are not displayed

5

### 🐛 Bug Report Points in range are not displayed cf [forum.image.sc post](https://forum.image.sc/t/napari-points-within-a-mesh/92886/9?u=romainguiet) , @jni suggested to open an issue ### 💡 Steps to Reproduce ```python import numpy as np...

Adding User's groups as drop-down - feature request

5

Dear @tlambert03 , I found a bit "confusing" to have a "flat" access to all the projects when connecting to the session. As the default omero behavior is to arrive...

Install Napari-Omero from Napari>Plugins>Install/Uninstall plugins

3

Dear @tlambert03 , thank you for making this napari plugin available! It's already super user friendly! I particularly like the browsing of images within a dataset and easy loading in...

ImportError: cannot import name 'ifft' from 'scipy'

10

Dear omnipose team, Thank you for making your tool available for the community! Following your installation instructions I created a new environment : ``` mamba create -n omnipose-106 'python==3.10.12' pytorch...

if the channel is blue it might be 3 instead of 2

Create position from script and send them to the GUI - feature request

4

Dear @team , Thank you for this great tool ! It would be nice if after creating the position from a [script ](https://github.com/napari/napari-animation/blob/main/examples/animate3D.py) it would be possible to send them...

on the fly example 3D, multi channels, multi timepoints

1

Hi @constantinpape, Thank you for this package, is there any chance you will upgrade "soon" your [ on the fly 2D example](https://github.com/constantinpape/pybdv/blob/master/examples/on_the_fly.py) with a minimal 3D, multi channels, multi timepoints?...