Rolf Schröder

This is a Nix/NixOS-specific issue because files in `/nix/store` are by default read-only and nf-core mirrors theses file permissions when setting up a project. This is why @asp8200 probably cannot...

Things that would need to be fixed for Nix/NixOS (as far as I can tell now): * +r operations on all template files * +x on `/bin/*` * Do *not*...

`OpenInGHFileLines+` doesn't work for me neither. A GitHub [search](https://github.com/search?q=OpenInGHFileLines%2B&type=code) suggests that it should work though :shrug: .

@lukfor Are there any plans to support `setup()` for pipelines? My use case is that I'd like to do an end to end run and then write several tests on...

Okay, cool, thank you!

I tried version `2bc23bc73d7f2643bc7a70b042dc52b9f45190ff` (9.0.0-rc2) and I'm still not able to run `nf-test` as expected. Maybe I'm doing it wrong :thinking:. This is how my test data looks like. I'm...

I resolved this problem by using `NXF_FILE_ROOT` ([docs](https://www.nextflow.io/docs/latest/config.html)): The samplesheet should designed to work with `nextflow` out of the box (i.e. make paths relative to pipeline root dir). But I...

Ah, cool @etal Thank you for addressing this!

I used the following approach for now: ```nextflow process { ... script: def prolog = task.ext.prolog ?: '' ... """ $prolog """" } ``` ``` withName: MY_PROCESS { ext.prolog =...

@ewels Thanks for the hint. I do not understand the suggestion, though. `eval` would allow me to add further *output* (channels) to the process, however, my use case is that...