Rojin Safavi

Hello, I am using a package called ArchR to do ATACseq analysis. ArchR uses TFBSTools to extract motifs. I noticed there is only 633 TF extracted from Jaspar, but I...

latent space

1

Hello, Is there a way to look at the latent space?

Have you ever tested the model accuracy for prediction using the latent spaces? I am not getting a good result. Also, in the original code, they seem to concatenate the...

I was wondering if you have an example of adversarial autoencoders applied to non-image data?

I have 4 immunofluorescence images from 4 adjacent slides (in tiff), which should cover ~2-cell in z-stack. I need to align those slides (I think it is called image registration)....

is the pytorch implementation completed?

1

is the pytorch implementation completed?

I have 4 immunofluorescence images from 4 adjacent slides (in tiff), which should cover ~2-cell in z-stack. I need to align those slides (I think it is called image registration)....

I am scanning a bed file for known motifs. I was wondering if there is a way to distinguish direct vs indirect here? I used the following command: gimme scan...