Drawing error

[khoriba]

Hi, I am unable to get the diagram with the following error. The input file used is GBK format. I believe the software has been successfully installed.

$ genovi -i annotation.gbk -s complete -cs paradice -bc white
/home/miniconda3/envs/genovi/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1219: BiopythonParserWarning: Premature end of file in sequence data
  "Premature end of file in sequence data", BiopythonParserWarning

GBK file transformed into faa succesfully. File saved as genovi-temp/contig_1-genovi.faa
output genovi-temp/contig_1-genovi

Deepnog prediction started

deepnog infer genovi-temp/contig_1-genovi.faa --out genovi-temp/contig_1-genovi_prediction_deepnog.csv -db cog2020 -t 1
[2023-08-02 09:02:14] deepnog.client.client - INFO - Starting deepnog
[2023-08-02 09:03:21] deepnog.client.client - INFO - Loading NN-parameters from /home/deepnog_data/cog2020/1/deepnog.pth ...
[2023-08-02 09:03:21] deepnog.client.client - INFO - Accessing dataset from genovi-temp/contig_1-genovi.faa ...
[2023-08-02 09:03:22] deepnog.client.client - INFO - Starting protein sequence group/family inference ...
[2023-08-02 09:03:22] deepnog.learning.inference - INFO - Inference device: cpu
deepnog inference: 2.46kseq [00:45, 53.5seq/s]
[2023-08-02 09:04:08] deepnog.learning.inference - INFO - Inference complete.
[2023-08-02 09:04:09] deepnog.client.client - INFO - Writing prediction to genovi-temp/contig_1-genovi_prediction_deepnog.csv
[2023-08-02 09:04:09] deepnog.client.client - INFO - All done.

Deepnog prediction finished succesfully. Predictions saved as genovi-temp/contig_1-genovi_prediction_deepnog.csv

/home/miniconda3/envs/genovi/lib/python3.7/site-packages/Bio/GenBank/Scanner.py:1219: BiopythonParserWarning: Premature end of file in sequence data
  "Premature end of file in sequence data", BiopythonParserWarning
genovi-temp/contig_1-genovi_bands.kar created succesfully.
genovi-temp/contig_1-genovi_tRNA_pos.txt created succesfully.
.
.
.
Transforming GenBank record sequence1.1 to .fna
Done
Drawing 1...
Traceback (most recent call last):
  File "/home/miniconda3/envs/genovi/bin/genovi", line 8, in <module>
    sys.exit(main())
  File "/home/miniconda3/envs/genovi/lib/python3.7/site-packages/scripts/GenoVi.py", line 685, in main
    visualiseGenome(*get_args())
  File "/home/miniconda3/envs/genovi/lib/python3.7/site-packages/scripts/GenoVi.py", line 382, in visualiseGenome
    os.rename("circos.svg", output_file + "-contig_" + str(i) + ".svg")
FileNotFoundError: [Errno 2] No such file or directory: 'circos.svg' -> 'genovi-contig_1.svg'

Thanks