puzzle

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Bumps [jquery](https://github.com/jquery/jquery) from 2.2.4 to 3.5.0. Commits 7a0a850 3.5.0 8570a08 Release: Update AUTHORS.txt da3dd85 Ajax: Do not execute scripts for unsuccessful HTTP responses 065143c Ajax: Overwrite s.contentType with content-type header...

dependabot[bot]

Hello, issue is during execution of command `gemini browser my.db --use puzzle` there is problem with compatibility of interfaces: In line 267 of file [gemini_browser.py](https://github.com/arq5x/gemini/blob/master/gemini/gemini_browser.py) there is usage of `GeminiPlugin`...

DamianSkrzypczak

path

1

Hi everybody, I see in the requirements path.py is needed. I tried to install all of these, and downgraded cyvcf2 to version 0.2.8 I believe. A version for path.py is...

colindaven

Puzzle crashed while visualising a large CNV. I got the following error-message; how can I fix this? Traceback (most recent call last): File "/Users/johlun/miniconda2/envs/puzzle/bin/puzzle", line 11, in sys.exit(cli()) File "/Users/johlun/miniconda2/envs/puzzle/lib/python2.7/site-packages/click/core.py",...

johsko

gemini plugin

2

Hello, I recently installed puzzle and was hoping to view a gemini db with it. The install was fine ( I think). There are a couple of warning with the...

ramaniak

Added inheritance filter to gemini plugin

10

moonso

Create a proper test gemini database

1

We should have a gemini database with "synthetic" variants so we always know what to expect when writing tests

moonso

Documentation + logo

4

User guide and development guide EDIT: from @henrikstranneheim - [ ] Currently only support GRCh37/hg19 - [ ] What should be in the config

robinandeer

Search through all cases

8

We should think of a solution for how to do searches for all variants in all cases. When using the gemini- and mongo adapters this will be straightforward, we just...

moonso

You know what to do @robinandeer ...

moonso