Robin Andeer

Since the token is only valid for 1 hour it would be nice to include an option or perhaps by default reload expired tokens in exchange for fresh ones. I'm...

I've noticed an error from time to time that seems to be resolved after a page refresh. But every not and again, futuhours doesn't load with the following errors in...

It should be possible to detect when chrom X coverage is more than expected for a "male" sample. Usually a male has lower X coverage than a female.

Perhaps it's possible to write the test to also report when there's ambiguity in the sex determination For example when there's some reads on X but not enough to call...

Raise warning if sex prediction is based on too few exons

1

Set a reasonable cutoff for how many exons the prediction is based on (X/Y)

Update bootstrap to select between GRCh37/38

3

Latest CCDS is based on GRCh38

Store expected sex of sample

2

- compare in report - read in ped file? @moonso

This is a first very simple example: ``` python def gc_content(self, query=None, gc_amount='high', gene_ids=None): """Generate query to estimate coverage performace. Works by default on a small subset of genes with...

Capture sambamba output and pipe to logfile

4

If one runs sambamba through chanjo it would be awesome if the STDOUT/ERR would redirect to the same logfiles, don't you think?

Make `load_sambamba` return created sample objects