Robin Andeer
Robin Andeer
### Jekyll vs. Sphinx - Jekyll was primarily intended as a blogging tool, Sphinx is a documentation-first tool. - Helpful templates for Jekyll exists https://github.com/bruth/jekyll-docs-template/ - Jekyll is a versatile...
Instead of splitting up conda and pip requirements
https://github.com/bndr/pipreqs - [ ] investigate if this can be used to populate `setup.py` as well
A new utility to run commands when files changes. Could be added to the tasks.py file. https://github.com/joh/when-changed
This way ansible should recognize that it doesn't need to rerun that task
User guide and development guide EDIT: from @henrikstranneheim - [ ] Currently only support GRCh37/hg19 - [ ] What should be in the config
This is a project that we could use but it only works on OSX https://github.com/burrows-labs/pyship
Stödjer cosmid annat än ftp nedladdnigar? Jag skulle behöva kunna tanka ner följande filer via cosmid till MIP och visa är riktigt stora: http://evs.gs.washington.edu/evs_bulk_data/ESP6500SI-V2-SSA137.protein-hgvs-update.snps_indels.vcf.tar.gz http://dbnsfp.houstonbioinformatics.org/dbNSFPzip/dbNSFPv2.4.zip http://krishna.gs.washington.edu/download/CADD/v1.0/whole_genome_SNVs.tsv.gz http://krishna.gs.washington.edu/download/CADD/v1.0/whole_genome_SNVs.tsv.gz.tbi http://krishna.gs.washington.edu/download/CADD/v1.0/1000G.tsv.gz http://krishna.gs.washington.edu/download/CADD/v1.0/1000G.tsv.gz.tbi
New alternative implementation of essentially what cosmid is trying to accomplish: https://github.com/jbenet/data - \+ Compiled binaries - \+ Generalized (larger potential community)
GATK bundle resources get error and die Retry 5 times with timeout instead