Rob Patro

Hi @mdeyssen, Thanks for reporting this. This is really strange, as the compute note you're using here should be much more than capable of building this index reasonably quickly. Furthermore,...

Hi Jason, Thanks for the kind words, and for the detailed issue! This is sort of a tough one, since salmon tries to work out the relative abundance of these...

Hi Jason, Thanks for the super-detailed feedback! A couple of thoughts / questions: > FYI, I am getting a segfault when I run only --posBias in the current salmon version,...

Hi @ATpoint, Interesting idea! We’ll look into how this might be done while causing the least disruption to the existing codebase and report back if it seems straightforward to implement....

Hi @mr-c, First of all, **thank you** for your monumental effort in supporting salmon as a Debian package. I think this is fantastic. I'm also not a CMake expert, but...

Hi guys, Which existing dependencies would you like to be able to use? There are some of these libraries that cannot be replaced by already installed variants. Specifically, - BWA...

Oh wow; I had no idea about libgff :). Regarding Jellyfish, there's not a source "change" required upstream, rather the fact that I seem to require the `config.h` file that...

Very interesting! It used to be necessary, but perhaps Giullaume fixed this upstream at some point and I just wasn't aware. I'll see if I can merge those changes into...

I used autotools back in 2008 or so (when I was still working in computer graphics). I found it to be horribly archaic (not that CMake is a bastion of...

No, I believe that config.h was it. Otherwise, I just use the already installed headers and the pre-compiled library `libjellyfish-2.0`.