Rob Miller

> That's all via https://github.com/biopython/biopython/blob/master/Tests/test_Tutorial.py which is my glorious hack combining LaTeX with doctests. Without digging into it, my guess might be some code is not using the print(...) function...

Thank you @JoaoRodrigues!!! You are a star and hero for making it so the rest of us can submit pull requests, well done on the investigation and solution.

@peterjc have you noticed this problem on the ci tests? ``` Traceback (most recent call last): File "D:\a\biopython\biopython\Tests\test_PhyloXML.py", line 574, in test_phylo self._rewrite_and_call( File "D:\a\biopython\biopython\Tests\test_PhyloXML.py", line 512, in _rewrite_and_call getattr(inst,...

This is not a WIP, honest -- I'm just using 'in anger' now and finding niggles.

Nice sleuthing. For info the test is specifically testing for Unicode handling, though with a '(?)' so not very confidently: ``` def test_Distribution(self): ... Also checks Point type and safe...

This seems like the same endpoint that I was trying to achieve with my pdb_residue _string #3676 PR? That is, to generate a pdb file with arbitrary selected residues, and...

I ran into issues trying to output and color (in a PDB viewer) arbitrary sets of residues from multiple PDB files, preferably in a simple way to put in a...

On Sun, 1 Aug 2021 at 19:57, João Rodrigues ***@***.***> wrote: > Can you post a sample of what you are trying to do? I have the feeling > there's...

> The TER statement is something we can try to improve. Some tools write "naked" TER statements (simply TER), while others output a little more info. Most tools I know...

updated to incorporate #3679