Differences in diversity analysis when using other packages

[abedkurdi]

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Hello there,

First, I would like to thank you for this great package, I have been looking for such tool a while ago! Second, I was comparing the diversity plots, output from your package and output from scRepertoire R/Bioconductor package.

I thought I would be able to reproduce, if not identical results, something very similar when using both packages. However, it was not the case

I counted the number of unique clonotypes in both analyses and I got the exact same number for each hashtag.

Do you have any idea what could be happening here? I appreciate your help.