Robert Millikin

That error message looks like something from Galaxy. My guess is that FlashLFQ crashed during your analysis and Galaxy reported its own error message. I can ask the Galaxy team...

it doesn't remove outlier files; maybe there were no PSMs observed below 1% FDR for those two runs? can you check on that? If this is the case I can...

MBR currently uses identifications in common between two files to create the relative retention time gradient. if a file has no IDs, nothing in the file can be quantified currently....

the full sequence can be whatever you want (it's just a label). the base sequence must be composed of only amino acids, and it's best if you can get as...

Please share a file :) via email is fine. I can set up a Box if needed.