Robert Millikin

let's discuss when you're in

part of the score could be how gaussian the elution profile looks

Another machine-learning idea: For the purpose of using machine learning to determine a deconvolution scoring formula, we need a good training set of true-positive identifications (i.e. masses). We could use...

You didn't do anything wrong, the standalone version of FlashLFQ can't handle SILAC output from MetaMorpheus yet. Unfortunately, MetaMorpheus doesn't have the updated protein quant either at this point. I...

unfortunately not - this likely won't happen in the near future, at least from me. I graduated about a year ago and am still doing some maintenance, but no new...

Thanks for the crash report - I'm about to release a major new version with a revamped Bayesian quant. If this crash persists in that new version I'll check it...

The settings .toml should be written to the output folder. Can you double-check? 

FlashLFQ does not support multiple identification files, but as @trishorts just mentioned, you can certainly have identifications from multiple spectra files contained in one identification file. The "File Name" column...

Just FYI, the GUI can take in multiple ID files. The command-line version cannot yet but I will add this to a release soon.

Hi @lucssantos , When combining PSM files, FlashLFQ will interpret any protein with the same accession as the same protein. e.g. if you have Accession1 in one file and Accession1...