RepeatMasker
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feature request to include repeat class and family name in the GFF output
What do you want to know? Can we please add the feature to include repeat class and family information in the GFF output. This helps with downstream processes such as counting lengths of repeats in different classes.
Helpful context
I have made the changes at https://github.com/kango2/RepeatMasker/blob/master/ProcessRepeats
in my fork. Output looks like as follows:
SeqID RepeatMasker dispersed_repeat 13152 13368 16.7 - . ID=32;Target "Motif:MSTB";RepeatType "Class/Family:LTR/ERVL-MaLR" 211 426
I am sorry that this is not a question.