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feature request to include repeat class and family name in the GFF output

Open hp2048 opened this issue 5 months ago • 0 comments

What do you want to know? Can we please add the feature to include repeat class and family information in the GFF output. This helps with downstream processes such as counting lengths of repeats in different classes.

Helpful context I have made the changes at https://github.com/kango2/RepeatMasker/blob/master/ProcessRepeats in my fork. Output looks like as follows:

SeqID	RepeatMasker	dispersed_repeat	13152	13368	16.7	-	.	ID=32;Target "Motif:MSTB";RepeatType "Class/Family:LTR/ERVL-MaLR" 211 426

I am sorry that this is not a question.

hp2048 avatar Sep 26 '24 05:09 hp2048