RepeatMasker
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rmhubley
WUBlastXSearchEngine::setPathToEngine( path/blastx ): Cannot determine engine variant and version!
What do you want to know?
why cannot determine engine variant and version ?
What can I do to make it work？
Helpful context
RepeatProteinMask - 4.1.2-p1 installed by conda.
run command:
RepeatProteinMask -engine wublast genome.fa
run err :
WUBlastXSearchEngine::setPathToEngine( /lab_path/anaconda3/envs/repeatmasker/bin/blastx ): Cannot determine engine variant and version!
at /lab_path/anaconda3/envs/repeatmasker/bin/RepeatProteinMask line 344.
run out:
Masking Simple Repeats...
- Tandem Repeats: 1655286
Masking Repeat Proteins...
I checked that blastx can run independently. I look forward to your help
Oh...that's probably a bug. If you edit the WUBlastSearchEngine.pm file in RepeatMasker (near line 286):
# BLASTN 3.0-SE [2009-05-25] [linux26-x64-I32LPF64 2009-05-25T22:58:29]
if ( $result =~ /^(BLAST[PN]) (\S+ \[.*\])/m ) {
To include the "X" suffix like so:
if ( $result =~ /^(BLAST[PNX]) (\S+ \[.*\])/m ) {
And then retry. If that works I will include this change in the next release.
This has been fixed in RepeatMasker 4.1.5 released today.
I'm sorry that the version I used is 4.1.5, but I still have this problem. Do you know any solution?
What do you want to know? why cannot determine engine variant and version ? What can I do to make it work？ Helpful context RepeatProteinMask - 4.1.2-p1 installed by conda. run command:
RepeatProteinMask -engine wublast genome.farun err :WUBlastXSearchEngine::setPathToEngine( /lab_path/anaconda3/envs/repeatmasker/bin/blastx ): Cannot determine engine variant and version! at /lab_path/anaconda3/envs/repeatmasker/bin/RepeatProteinMask line 344.run out:
Masking Simple Repeats... - Tandem Repeats: 1655286 Masking Repeat Proteins...I checked that blastx can run independently. I look forward to your help
Hey, did you fix the problem later?