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Published 20 hours ago • verified publisher icon rkingdc

RStudio module not running

Open leungi opened this issue 5 years ago • 3 comments

Similar to #1, RStudio container fails to start.

Running docker run rstudio:latest also fails with standard_init_linux.go:211: exec user process caused "no such file or directory".

I tried tweaking application.yml and pull RStudio image from rocker/rstudio, but no luck. I suspect it's the ./datascience-portal/rstudio/start.sh that needs review, but it's too deep for me to understand 😅

This is the nginx message when RStudio is launching

shinyproxy_server | 2019-11-08 20:43:06.538  INFO 1 --- [  XNIO-2 task-3] c.s.docker.client.DefaultDockerClient    : Starting container with Id: d3965dcf2d003f769efc538a43a689bdd7c3ee23140c4ef1f48228fc1ca36b02
shinyproxy_server | 2019-11-08 20:43:14.621  WARN 1 --- [  XNIO-2 task-3] e.o.shinyproxy.ShinyProxyTestStrategy    : Container unresponsive, trying again (2/10): http://d3965dcf2d00:8787
shinyproxy_server | 2019-11-08 20:43:21.628  WARN 1 --- [  XNIO-2 task-3] e.o.shinyproxy.ShinyProxyTestStrategy    : Container unresponsive, trying again (3/10): http://d3965dcf2d00:8787
shinyproxy_server | 2019-11-08 20:43:28.635  WARN 1 --- [  XNIO-2 task-3] e.o.shinyproxy.ShinyProxyTestStrategy    : Container unresponsive, trying again (4/10): http://d3965dcf2d00:8787
shinyproxy_server | 2019-11-08 20:43:35.642  WARN 1 --- [  XNIO-2 task-3] e.o.shinyproxy.ShinyProxyTestStrategy    : Container unresponsive, trying again (5/10): http://d3965dcf2d00:8787
shinyproxy_server | 2019-11-08 20:43:39.312  WARN 1 --- [  XNIO-2 task-3] e.o.shinyproxy.ShinyProxyTestStrategy    : Container unresponsive, trying again (6/10): http://d3965dcf2d00:8787
shinyproxy_server | 2019-11-08 20:43:41.314  WARN 1 --- [  XNIO-2 task-3] e.o.shinyproxy.ShinyProxyTestStrategy    : Container unresponsive, trying again (7/10): http://d3965dcf2d00:8787
shinyproxy_server | 2019-11-08 20:43:43.315  WARN 1 --- [  XNIO-2 task-3] e.o.shinyproxy.ShinyProxyTestStrategy    : Container unresponsive, trying again (8/10): http://d3965dcf2d00:8787
shinyproxy_server | 2019-11-08 20:43:45.316  WARN 1 --- [  XNIO-2 task-3] e.o.shinyproxy.ShinyProxyTestStrategy    : Container unresponsive, trying again (9/10): http://d3965dcf2d00:8787
shinyproxy_server | 2019-11-08 20:43:47.318  WARN 1 --- [  XNIO-2 task-3] e.o.shinyproxy.ShinyProxyTestStrategy    : Container unresponsive, trying again (10/10): http://d3965dcf2d00:8787
shinyproxy_server | 2019-11-08 20:43:49.345 ERROR 1 --- [  XNIO-2 task-3] io.undertow.request                      : UT005023: Exception handling request to /app/rstudio
shinyproxy_server |
shinyproxy_server | org.springframework.web.util.NestedServletException: Request processing failed; nested exception is eu.openanalytics.containerproxy.ContainerProxyException: Container did not respond in time
shinyproxy_server |     at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:986) ~[spring-webmvc-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:881) ~[spring-webmvc-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at javax.servlet.http.HttpServlet.service(HttpServlet.java:707) ~[javax.servlet-api-3.1.0.jar!/:3.1.0]
shinyproxy_server |     at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:855) ~[spring-webmvc-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) ~[javax.servlet-api-3.1.0.jar!/:3.1.0]
shinyproxy_server |     at io.undertow.servlet.handlers.ServletHandler.handleRequest(ServletHandler.java:74) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.FilterHandler$FilterChainImpl.doFilter(FilterHandler.java:129) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:320) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:127) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:91) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:119) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:137) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:111) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:170) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:63) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:158) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:200) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:116) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:66) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:105) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:56) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:334) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:215) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:178) ~[spring-security-web-5.0.3.RELEASE.jar!/:5.0.3.RELEASE]
shinyproxy_server |     at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:357) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:270) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at io.undertow.servlet.core.ManagedFilter.doFilter(ManagedFilter.java:61) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.FilterHandler$FilterChainImpl.doFilter(FilterHandler.java:131) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:99) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at io.undertow.servlet.core.ManagedFilter.doFilter(ManagedFilter.java:61) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.FilterHandler$FilterChainImpl.doFilter(FilterHandler.java:131) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at org.springframework.web.filter.HttpPutFormContentFilter.doFilterInternal(HttpPutFormContentFilter.java:109) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at io.undertow.servlet.core.ManagedFilter.doFilter(ManagedFilter.java:61) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.FilterHandler$FilterChainImpl.doFilter(FilterHandler.java:131) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at org.springframework.web.filter.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:81) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at io.undertow.servlet.core.ManagedFilter.doFilter(ManagedFilter.java:61) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.FilterHandler$FilterChainImpl.doFilter(FilterHandler.java:131) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:200) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at io.undertow.servlet.core.ManagedFilter.doFilter(ManagedFilter.java:61) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.FilterHandler$FilterChainImpl.doFilter(FilterHandler.java:131) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.FilterHandler.handleRequest(FilterHandler.java:84) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.security.ServletSecurityRoleHandler.handleRequest(ServletSecurityRoleHandler.java:62) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.ServletChain$1.handleRequest(ServletChain.java:64) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.ServletDispatchingHandler.handleRequest(ServletDispatchingHandler.java:36) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.server.handlers.PathHandler.handleRequest(PathHandler.java:94) ~[undertow-core-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at eu.openanalytics.containerproxy.ContainerProxyApplication$ProtectedPathHandler.handleRequest(ContainerProxyApplication.java:111) ~[containerproxy-0.7.0.jar!/:0.7.0]
shinyproxy_server |     at io.undertow.servlet.handlers.security.SSLInformationAssociationHandler.handleRequest(SSLInformationAssociationHandler.java:131) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.security.ServletAuthenticationCallHandler.handleRequest(ServletAuthenticationCallHandler.java:57) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.server.handlers.PredicateHandler.handleRequest(PredicateHandler.java:43) ~[undertow-core-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.security.handlers.AbstractConfidentialityHandler.handleRequest(AbstractConfidentialityHandler.java:46) ~[undertow-core-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.security.ServletConfidentialityConstraintHandler.handleRequest(ServletConfidentialityConstraintHandler.java:64) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.security.handlers.AuthenticationMechanismsHandler.handleRequest(AuthenticationMechanismsHandler.java:60) ~[undertow-core-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.security.CachedAuthenticatedSessionHandler.handleRequest(CachedAuthenticatedSessionHandler.java:77) ~[undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.security.handlers.AbstractSecurityContextAssociationHandler.handleRequest(AbstractSecurityContextAssociationHandler.java:43) ~[undertow-core-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.server.handlers.PredicateHandler.handleRequest(PredicateHandler.java:43) ~[undertow-core-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.server.handlers.PredicateHandler.handleRequest(PredicateHandler.java:43) ~[undertow-core-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.ServletInitialHandler.handleFirstRequest(ServletInitialHandler.java:292) [undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.ServletInitialHandler.access$100(ServletInitialHandler.java:81) [undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.ServletInitialHandler$2.call(ServletInitialHandler.java:138) [undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.ServletInitialHandler$2.call(ServletInitialHandler.java:135) [undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.core.ServletRequestContextThreadSetupAction$1.call(ServletRequestContextThreadSetupAction.java:48) [undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.core.ContextClassLoaderSetupAction$1.call(ContextClassLoaderSetupAction.java:43) [undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.ServletInitialHandler.dispatchRequest(ServletInitialHandler.java:272) [undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.ServletInitialHandler.access$000(ServletInitialHandler.java:81) [undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.servlet.handlers.ServletInitialHandler$1.handleRequest(ServletInitialHandler.java:104) [undertow-servlet-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.server.Connectors.executeRootHandler(Connectors.java:336) [undertow-core-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at io.undertow.server.HttpServerExchange$1.run(HttpServerExchange.java:830) [undertow-core-1.4.22.Final.jar!/:1.4.22.Final]
shinyproxy_server |     at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [na:1.8.0_232]
shinyproxy_server |     at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [na:1.8.0_232]
shinyproxy_server |     at java.lang.Thread.run(Thread.java:748) [na:1.8.0_232]
shinyproxy_server | Caused by: eu.openanalytics.containerproxy.ContainerProxyException: Container did not respond in time
shinyproxy_server |     at eu.openanalytics.containerproxy.backend.AbstractContainerBackend.startProxy(AbstractContainerBackend.java:115) ~[containerproxy-0.7.0.jar!/:0.7.0]
shinyproxy_server |     at eu.openanalytics.containerproxy.service.ProxyService.startProxy(ProxyService.java:213) ~[containerproxy-0.7.0.jar!/:0.7.0]
shinyproxy_server |     at eu.openanalytics.shinyproxy.controllers.AppController.getOrStart(AppController.java:89) ~[classes!/:2.1.0]
shinyproxy_server |     at eu.openanalytics.shinyproxy.controllers.AppController.startApp(AppController.java:72) ~[classes!/:2.1.0]
shinyproxy_server |     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_232]
shinyproxy_server |     at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_232]shinyproxy_server |     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_232]
shinyproxy_server |     at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_232]
shinyproxy_server |     at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:209) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:136) ~[spring-web-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:102) ~[spring-webmvc-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:870) ~[spring-webmvc-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:776) ~[spring-webmvc-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:87) ~[spring-webmvc-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:991) ~[spring-webmvc-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:925) ~[spring-webmvc-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:978) ~[spring-webmvc-5.0.4.RELEASE.jar!/:5.0.4.RELEASE]
shinyproxy_server |     ... 87 common frames omitted
shinyproxy_server |

leungi avatar Nov 08 '19 20:11 leungi

Thought I'd add - Dash and Shiny modules work as designed.

leungi avatar Nov 08 '19 21:11 leungi

I haven't spent much time on this lately--I'm focusing on other things right now. I would guess this error is happening when docker tries to mount the host user's home directory. The way I needed to set up paths to make sure it could work was pretty wonky. If I get some time I'll look into it, but I'd focus on making sure the user directories on the host system are set up correctly

rkingdc avatar Sep 03 '20 17:09 rkingdc

I actually started exploring shinyproxy directly, and was able to implement most of the modules you have, except for Jupyter 😅

Your work is an inspiration!

leungi avatar Sep 11 '20 23:09 leungi