bioruby-ngs
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rjpbonnal
This plugins is intended to wrap the common software used for Next Generation Sequencing data
Maybe we could remove the qseq tasks for raw Illumina conversion, they are not needed anymore with latest Casava, is this correct?
There is this error in the compilation of FASTX package on Mac OS X when pkg-config is not present: configure: error: The pkg-config script could not be found or is...
Software must be installed on your local machine, biongs can not download it.
Some task can run only if a directory structure is satisfied, i.e. biongs convert:qseq:fastq:by_lane_index biongs convert:qseq:fastq:samples_by_lane they expect to work in a directory with file and directories created from Illumina's...
Bumps [activerecord](https://github.com/rails/rails) from 3.2.13 to 6.1.7.1. Release notes Sourced from activerecord's releases. v6.1.7.1 Active Support Avoid regex backtracking in Inflector.underscore [CVE-2023-22796] Active Model No changes. Active Record Make sanitize_as_sql_comment more...
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Bumps [git](https://github.com/ruby-git/ruby-git) from 1.2.5 to 1.13.0. Release notes Sourced from git's releases. Release v1.13.0 Full Changelog 8349224 Update list of maintainers (#598) 4fe8738 In ls-files do not unescape file paths...