bioruby-ngs
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rjpbonnal
This plugins is intended to wrap the common software used for Next Generation Sequencing data
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.5.9 to 1.13.9. Release notes Sourced from nokogiri's releases. 1.13.9 / 2022-10-18 Security [CRuby] Vendored libxml2 is updated to address CVE-2022-2309, CVE-2022-40304, and CVE-2022-40303. See GHSA-2qc6-mcvw-92cw for...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
Bumps [addressable](https://github.com/sporkmonger/addressable) from 2.3.4 to 2.8.1. Changelog Sourced from addressable's changelog. Addressable 2.8.1 refactor Addressable::URI.normalize_path to address linter offenses (#430) remove redundant colon in Addressable::URI::CharacterClasses::AUTHORITY regex (#438) update gemspec to...
Bumps [tzinfo](https://github.com/tzinfo/tzinfo) from 0.3.37 to 0.3.61. Release notes Sourced from tzinfo's releases. v0.3.61 Fixed a relative path traversal bug that could cause arbitrary files to be loaded with require from...
Bumps [activerecord](https://github.com/rails/rails) from 3.2.13 to 5.2.8.1. Release notes Sourced from activerecord's releases. 5.2.8 Active Support Fix tag helper regression. Eileen Uchitelle Active Model No changes. Active Record No changes. Action...
Bumps [git](https://github.com/ruby-git/ruby-git) from 1.2.5 to 1.11.0. Release notes Sourced from git's releases. Release v1.11.0 Full Changelog 292087e Supress unneeded test output (#570) 19dfe5e Add support for fetch options "--force/-f" and...
Bumps [rdoc](https://github.com/ruby/rdoc) from 4.0.1 to 6.3.2. Changelog Sourced from rdoc's changelog. === 5.1.0 / 2017-02-24 Bug fixes Fix an issue that rdoc fails when running on Windows with RUBYOPT=-U. PR...
Bumps [json](https://github.com/flori/json) from 1.7.7 to 2.3.0. Changelog Sourced from json's changelog. 2019-12-11 (2.3.0) Fix default of create_additions to always be false for JSON(user_input) and JSON.parse(user_input, nil). Note that JSON.load remains...
Bumps [rack](https://github.com/rack/rack) from 1.5.2 to 2.2.3. Changelog Sourced from rack's changelog. Changelog All notable changes to this project will be documented in this file. For info on how to format...
Bumps [rake](https://github.com/ruby/rake) from 10.0.4 to 12.3.3. Changelog *Sourced from [rake's changelog](https://github.com/ruby/rake/blob/master/History.rdoc).* > === 12.3.3 > > ==== Bug fixes > > * Use the application's name in error message if...
@helios, I've corrected a typographical error in the documentation of the [bioruby-ngs](https://github.com/helios/bioruby-ngs) project. Specifically, I've changed calulate to calculate. You should be able to merge this pull request automatically. However,...
