Richard Brown

Subsequent hparams missing

4

**Describe the bug** Any hparams not present in the first run will never be shown. This is frustrating if extra information is added as you realise it might be relevant...

### Description If bounding box is always the same, it makes sense to give the user the option to set it in the constructor. If bbox given in `__call__` method...

VanillaGrad, SmoothGrad, etc. have crosshatching

1

**Describe the bug** We've noticed that `VanillaGrad` and its derivatives seem to generate a crosshatching effect. It's hard to notice in the cats and dogs [example](https://github.com/Project-MONAI/tutorials/blob/main/modules/interpretability/cats_and_dogs.ipynb) (possibly because images are...

Decrease brightness of all but current item

1

Is it possible to decrease the brightness of (and blur, although that seems a lot harder) all but the currently-selected image?

computation of dice

4

Hi, I was looking at [your implementation](https://github.com/anjany/verse/blob/main/utils/eval_utilities.py#L13) of the dice score. I notice that in your [example notebook](https://github.com/anjany/verse/blob/main/utils/evaluate.ipynb), the image is loaded and passed straight into `compute_dice` function without any...

endoscopy example doesn't work out of the box

1

The endoscopy example needs the endovis data, but this isn't referred to on the page, nor are there any instructions for downloading the correct data. We downloaded a sample set...

I would insert `intersection_area = max(intersection_area, 0)` after [line 36](https://github.com/christianpayer/MedicalDataAugmentationTool-VerSe/blob/master/verse2020/utils/spine_localization_postprocessing.py#L36), such that two boxes with no overlap have an intersection area of 0.

UseITK uses include_directories and link_directories

9

### Description `UseITK.cmake` uses `include_directories` and `link_directories`. ### Steps to Reproduce N/A ### Expected behavior Variables should be returned such that `target_include_directories` and `target_link_libraries` can be used. ### Actual behavior...

Vertical streak artifacts

22

I've noticed vertical streak artifacts on my MLEM reconstructions (also those in STIR using the NP projectors). I'm using the example Zenodo data. Am I doing something wrong or is...