conkit

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Contact Prediction ToolKit

A Python Interface to Contact Predictions

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NEW: Now ConKit is also compatible with residue-residue distance predictions

ConKit is a Python library to provide a data object hierarchy and associated routine operations to work and manipulate residue-residue contact prediction data. Main features shipped with this library include:

• Parsers for Multiple Sequence Alignment, contact prediction and residue distance prediction files
• Analysis functions for Multiple Sequence Alignment, contact prediction data and residue distance prediction data
• Visualisation of Multiple Sequence Alignment, contact prediction data and residue distance prediction data
• Validation of models based on residue distance predictions
• Python wrappers for the contact-prediction-related software

For a general overview of ConKit, watch this video <https://youtu.be/YhHkfa7ggAE>_.

For an overview of model validation with ConKit, watch this video <https://www.youtube.com/watch?v=rG_WoUhdnLU&t=565s>_.

.. CHECKPOINT FOR READTHEDOCS

Installation & Usage ++++++++++++++++++++ Please refer to ConKit's documentation <http://www.conkit.org/en/latest/install.html>_.

Contributing ++++++++++++ There are two ways by which you can contribute to ConKit:

1. Submit any suggestions to the GitHub Issue Tracker_, or
2. Fork this repository, commit your changes and submit a pull request.

Found a Bug? ++++++++++++ Please use the GitHub Issue Tracker_.

.. _GitHub Issue Tracker: https://github.com/rigdenlab/conkit/issues