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Published 20 hours ago • verified publisher icon richfitz
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diversitree: comparative phylogenetic analyses of diversification

Results 16 diversitree issues
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Problem with asr.stoch and irreversible model

Dear @richfitz Nice job on diversitree - I've just started to play with it. I'm trying to run stochastic mapping using the example of an irreversible mk2 model given [here](https://stat.ethz.ch/pipermail/r-sig-phylo/attachments/20140701/3b146e75/attachment.pl)...

sdwfrost avatar sdwfrost

QuaSSE gives confusing error message when diffusion ommitted

Should just check number of parameters and avoid this error. ``` library(diversitree) lambda

richfitz avatar richfitz

Missing references in make.ou

Perhaps Hansen 1997? And Felsenstein? Blomberg 200X?

nhcooper123 avatar nhcooper123

OU calculations on non-ultrametric trees

See email from Pennell (7/12/2013), http://www.zoology.ubc.ca/prog/diversitree/examples/ou-nonultrametric/ and ``` coffee library(diversitree) set.seed(2) tree

richfitz avatar richfitz

constrain behaves weirdly if doubly constraining a parameter:

Reported by @dwbapst: ``` coffee library(diversitree) pars

richfitz avatar richfitz

make.musse should bail if given a clade.tree

Reported by Daniel Caetano: ``` coffee tree

richfitz avatar richfitz

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diversitree: comparative phylogenetic analyses of diversification

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