DiagrammeR
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Published
20 hours ago •
rich-iannone
rich-iannone
Node shape 'note' isn't working / not showing
Hi!! I tested all node shapes and they are shown, but the 'note' isn't. Maybe that can be fixed.
Best,
is this the list of shapes from: https://graphviz.org/doc/info/shapes.html ?
Hi Alex! Yes, I tested these shapes, and all are showing correctly in DiagrammeR, but "note" isn't.
I can confirm this behavior. It looks like there are also issues with restrictionsite (no shape) and point (no label)
library("DiagrammeR")
columns <- 5
shapes <- c(
"box",
"polygon",
"ellipse",
"oval",
"circle",
"point",
"egg",
"triangle",
"plaintext",
"plain",
"diamond",
"trapezium",
"parallelogram",
"house",
"pentagon",
"hexagon",
"septagon",
"octagon",
"doublecircle",
"doubleoctagon",
"tripleoctagon",
"invtriangle",
"invtrapezium",
"invhouse",
"Mdiamond",
"Msquare",
"Mcircle",
"rect",
"rectangle",
"square",
"star",
"none",
"underline",
"cylinder",
"note",
"tab",
"folder",
"box3d",
"component",
"promoter",
"cds",
"terminator",
"utr",
"primersite",
"restrictionsite",
"fivepoverhang",
"threepoverhang",
"noverhang",
"assembly",
"signature",
"insulator",
"ribosite",
"rnastab",
"proteasesite",
"proteinstab",
"rpromoter",
"rarrow",
"larrow",
"lpromoter"
)
ndf <- create_node_df(
n = length(shapes),
label = shapes,
shape = shapes
) %>%
dplyr::mutate(
x = (id %% columns),
y = floor(id / columns)
)
create_graph(nodes_df = ndf)
#> DiagrammeR Graph // 59 nodes
#> -- directed / disconnected / DAG / simple
#>
#> NODES / type: <unused> / label: 59 vals - complete & unique
#> -- 3 additional node attributes (shape, x, y)
#> EDGES / rel: <unused> info: `get_edge_df()`
#> -- no additional edge attributes
#> SELECTION / <none>
#> CACHE / <none>
#> GLOBAL ATTRS / 17 are set info: `get_global_graph_attr_info()`
#> GRAPH ACTIONS / <none>
#> GRAPH LOG / create_graph()
Created on 2022-01-05 by the reprex package (v0.3.0)
Session info
devtools::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.0.3 (2020-10-10)
#> os macOS Catalina 10.15.7
#> system x86_64, darwin19.6.0
#> ui unknown
#> language (EN)
#> collate en_US.UTF-8
#> ctype en_US.UTF-8
#> tz Europe/Belgrade
#> date 2022-01-05
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────
#> package * version date lib source
#> assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.0.3)
#> cachem 1.0.4 2021-02-13 [1] CRAN (R 4.0.3)
#> callr 3.7.0 2021-04-20 [1] CRAN (R 4.0.3)
#> cli 3.1.0 2021-10-27 [1] CRAN (R 4.0.3)
#> crayon 1.4.1 2021-02-08 [1] CRAN (R 4.0.3)
#> DBI 1.1.1 2021-01-15 [1] CRAN (R 4.0.3)
#> desc 1.4.0 2021-09-28 [1] CRAN (R 4.0.3)
#> devtools 2.4.2 2021-06-07 [1] CRAN (R 4.0.3)
#> DiagrammeR * 1.0.6.1 2020-05-08 [1] CRAN (R 4.0.3)
#> digest 0.6.27 2020-10-24 [1] CRAN (R 4.0.3)
#> dplyr 1.0.7 2021-06-18 [1] CRAN (R 4.0.3)
#> ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.0.3)
#> evaluate 0.14 2019-05-28 [1] CRAN (R 4.0.3)
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#> fs 1.5.0 2020-07-31 [1] CRAN (R 4.0.3)
#> generics 0.1.0 2020-10-31 [1] CRAN (R 4.0.3)
#> glue 1.5.0 2021-11-07 [1] CRAN (R 4.0.3)
#> highr 0.8 2019-03-20 [1] CRAN (R 4.0.3)
#> htmltools 0.5.2 2021-08-25 [1] CRAN (R 4.0.3)
#> htmlwidgets 1.5.3 2020-12-10 [1] CRAN (R 4.0.3)
#> igraph 1.2.7 2021-10-15 [1] CRAN (R 4.0.3)
#> jsonlite 1.7.2 2020-12-09 [1] CRAN (R 4.0.3)
#> knitr 1.33 2021-04-24 [1] CRAN (R 4.0.3)
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#> magrittr 2.0.1 2020-11-17 [1] CRAN (R 4.0.3)
#> memoise 2.0.0 2021-01-26 [1] CRAN (R 4.0.3)
#> pillar 1.6.4 2021-10-18 [1] CRAN (R 4.0.3)
#> pkgbuild 1.2.0 2020-12-15 [1] CRAN (R 4.0.3)
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#> purrr 0.3.4 2020-04-17 [1] CRAN (R 4.0.3)
#> R6 2.5.0 2020-10-28 [1] CRAN (R 4.0.3)
#> RColorBrewer 1.1-2 2014-12-07 [1] CRAN (R 4.0.3)
#> remotes 2.4.1 2021-09-29 [1] CRAN (R 4.0.3)
#> rlang 0.4.12 2021-10-18 [1] CRAN (R 4.0.3)
#> rmarkdown 2.11 2021-09-14 [1] CRAN (R 4.0.3)
#> rprojroot 2.0.2 2020-11-15 [1] CRAN (R 4.0.3)
#> rstudioapi 0.13 2020-11-12 [1] CRAN (R 4.0.3)
#> sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 4.0.3)
#> stringi 1.5.3 2020-09-09 [1] CRAN (R 4.0.3)
#> stringr 1.4.0 2019-02-10 [1] CRAN (R 4.0.3)
#> testthat 3.1.0 2021-10-04 [1] CRAN (R 4.0.3)
#> tibble 3.1.6 2021-11-07 [1] CRAN (R 4.0.3)
#> tidyselect 1.1.1 2021-04-30 [1] CRAN (R 4.0.3)
#> usethis 2.0.1 2021-02-10 [1] CRAN (R 4.0.3)
#> utf8 1.1.4 2018-05-24 [1] CRAN (R 4.0.3)
#> vctrs 0.3.8 2021-04-29 [1] CRAN (R 4.0.3)
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#> withr 2.4.2 2021-04-18 [1] CRAN (R 4.0.3)
#> xfun 0.27 2021-10-18 [1] CRAN (R 4.0.3)
#> yaml 2.2.1 2020-02-01 [1] CRAN (R 4.0.3)
#>
#> [1] /usr/local/Cellar/r/4.0.3/lib/R/library