conda package doesn't have pplacer_threads option?

[CJREID]

Hi Rhys,

I'm using aviary via the conda package and I've been having gtdbtk run out of memory with the default setting of 48 threads for pplacer so I tried to set it lower on the command line --pplacer_threads 1 but I get this error.

usage: aviary [--version] [--verbosity VERBOSITY] [--log LOG]
              {assemble,recover,annotate,diversity,cluster,viral,complete,isolate,batch,configure}
              ...
aviary: error: unrecognized arguments: --pplacer_threads 1

I've also noticed that when I print the help, the option is not there. I also tried with the -p option and got the same error. The parameter seems to be present in all the .smk files and a number of python scripts within the package but just doesn't work as a command line option.

Cheers, Cam