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[Question] CI for Variant Calling

Open Krannich479 opened this issue 9 months ago • 5 comments

Is your feature request related to a problem? Please describe. No problem here, just a question and an offer.

Describe the solution you'd like I am currently developing a framework for continuous integration and evaluation of small variant calling. I read the GH Actions of poreCov and saw that the current tests are running dry runs testing principal functionality. What I offer is to write a GH Action to benchmark the variant calling (precision/recall/F1-score on synthetic data). Is that generally in your interest or beneficial? Are you already running such tests locally or otherwise outside of GH Actions?

Krannich479 avatar May 21 '24 12:05 Krannich479