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Published 20 hours ago • verified publisher icon replikation

Include artic-tools "validate_scheme"

Open DataSpott opened this issue 2 years ago • 1 comments

Custom Primer bed-files can be tricky to set up the right way, so that Medaka will recognize them. In case of an error with the bed-file the medaka-process just fails and the workflow ends without error-message. "artic-tools" (as for in this docker: "nanozoo/artic:1.3.0-dev--2c5b6a9") includes a tool named "validate_scheme" that checks a bed-file for errors and gives useful information about what is wrong if any was encountered.

artic-tools_error2

artic-tools_error

If the bed-file is setup correctly it gives out a short summary: artic-tools

DataSpott avatar Apr 01 '22 11:04 DataSpott