Christian Brandt

how does the nanopore files look like?

* okay figured out the bug. there is an error in regards when joining Illumina and nanopore data. * seems to be introduced in the newer nextflow versions Edit: @H1889...

can you do `mv 71.fastq.gz 72.fastq.gz` (so it has the file name `72.fastq.gz` instead of `71.fastq.gz`) we join nanopore and Illumina data together based on the same name so we...

i think this was introduced when @RVanDamme implemented multiple sample support. but its not clearly disclaimed in the readme or help

thank you for your patience, we adjust the documentation and add some error code to avoid further issues

which release are you using? there was an issue with maxbin2 not using all cores which i fixed (https://github.com/RVanDamme/MUFFIN/releases)

latest is this flag for nextflow run `-r 1.0.6` or [7b08e89](https://github.com/RVanDamme/MUFFIN/commit/7b08e89e358e2380ae73634fd49e4afc12ab4cc3)

sorry my bad this: [1.0.7](https://github.com/RVanDamme/MUFFIN/tree/1.0.7) https://github.com/RVanDamme/MUFFIN/commit/7b08e89e358e2380ae73634fd49e4afc12ab4cc3 forgot to add the fix of #30 to the release of 1.0.6

yes its the latest git commit. sorry for the confusion

i cant follow. all the outputs are stored via `--output dirname` the default value is "results" but if you use the flag it overrides it to your preference.