What_the_Phage
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cache directory of singularity
Dear all,
I recommend adding envWhitelist = 'SINGULARITY_LOCALCACHEDIR'
in the nextflow.config
to make the env SINGULARITY_LOCALCACHEDIR
usable in nextflow. This env could designate the location to which singularity images extract. For some nodes, the small /tmp
might make the mount failed.
Furthermore, the latest version of vibrant (v1.2.1) has reconstructed the parameters. Thus, I think we better update the version of vibrant and pass the database
instead of database.tar.gz
every time.