Remi Rampin
Remi Rampin
Where are you calling knex?
Found this thread: https://lkml.iu.edu/hypermail/linux/kernel/1712.2/04964.html Initial testing shows that this is a problem on Linux 6.2.0-26-generic and 5.4.0-110-generic
Might be an issue of missing `CAP_SYS_PTRACE` in containers, have to re-test.
This doesn't happen if you're root and have `CAP_SYS_PTRACE` (which is not the default in containers). I see it happening on GitHub Actions, have to investigate.
The `directory` unpacker provides no isolation so it's hard to tell if the experiment even looked in the right place. $HOME is set so hopefully yes. Does this happen if...
I can't reproduce this, I ran it successfully in a Ubuntu 18.04 VM. reprozip 1.1 (from pip) Python 3.8.0 (package `python3.8`) numpy 1.24.1 phate 1.0.10 scikit-learn 1.2.0 scipy 1.10.0 I...
Unfortunately there doesn't seem to be anything wrong in that log, it looks like PCA is running. I assume you have waited long enough and it never completes? ReproZip shouldn't...
Ubuntu 18,04 does not have Python 3.9 so I am not sure how to reproduce your setup. Did you compile Python from source?
How long are those commands taking respectively? There should be no overhead for the computing process, only for figuring out dependencies to write the `config.yml` at the end (and a...
I can reproduce the slowness if I increase the number of iterations. It seems that scikit-learn uses threads (15 for me) that call `sched_yield()` regularly, incurring the tracing overhead each...