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The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data reposi...

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Bumps [jquery](https://github.com/jquery/jquery) from 2.1.1 to 3.5.0. Commits 7a0a850 3.5.0 8570a08 Release: Update AUTHORS.txt da3dd85 Ajax: Do not execute scripts for unsuccessful HTTP responses 065143c Ajax: Overwrite s.contentType with content-type header...

dependencies
javascript

I am adding here updates to the README.md that make things a little clearer where I had trouble.

See occurances here: https://github.com/parklab/refinery-platform/search?q=ADMINS&type=Code&utf8=%E2%9C%93 ### Observed behavior This setting and its usages may not work properly with more than one Admin set. ### Expected behavior This setting and its usages...

bug
deployment
technical debt

We should create a model (or a collection of models) to capture and represent the information required to view genomic data for a particular species. This should include information such...

database
visualization
api
feature
server

I believe there was talk about being able to save the state of a visualization tool to be able to share one's findings??? Assuming that this means there should be...

visualization
question

Currently for both lists and pairs, selections are made through a popover interface. There is a minimum of three clicks required to make a selection. ![node-selection-current](https://user-images.githubusercontent.com/9956764/27595473-c5a51e44-5b2a-11e7-8c86-dd6b2e390ed5.gif) Option A: Lists and...

enhancement
workflow
ui
dataset
files

@ngehlenborg or @jkmarx : Unless I'm missing something, there doesn't seem to be a way to highlight or subset down to just a given file in FileBrowser2, but there was...

feature

Since this is more than just a routing change, I didn't want to block #2007 with it.

feature

In the cross-dataset view, clicking on "Download as CSV" takes your browser here: ``` https://test.stemcellcommons.org/files_download?fq=&sort= ``` When the file is downloaded and saved: ``` $ wc -l ~/Downloads/user-files.csv 3218 /Users/chuck/Downloads/user-files.csv...

bug
feature

* Specific code commit: v1.6.6 * Version of the web browser and OS: N/A * Environment where the error occurred: AWS ### Steps to reproduce Unknown, error report received by...

bug
visualization
server
tools
docker