Refael Ackermann

Search with fast fail to cut 40% of proccessing

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#### Description #### Motivation and Context Speed #### How Has This Been Tested? 1. Step debugger 2. CLI inteface 3. tests #### Checklist: - [X] I have read the [Contributing...

refactor(install): Get reference for Users group via Enum

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#### Description 1. Update function description to reflect current logic 2. Get the reference to the well-known Users Group by using the WellKnown enum, instead of a magic string. ####...

- [X] I hereby agree to dual licence this and any previous contributions under both the _Biopython License Agreement_ **AND** the _BSD 3-Clause License_. - [X] I have read the...

xq: new app 1.3.0

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- [X] Use conventional PR title: `: ` - [X] I have read the [Contributing Guide](https://github.com/ScoopInstaller/.github/blob/main/.github/CONTRIBUTING.md)

## Bug Report #### Current Behavior running: ```console > scoop shim add myshim C:\tools\myapp.exe -- --form there --to here ``` outputs: ```console scoop shim: Option --form not recognized. ``` also:...

dict: on retrieval, key allowed to be null

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``` shell > uv run --with pyright pyright .\dict-none-key.py e:\1work\CFF\dict-none-key.py e:\1work\CFF\dict-none-key.py:4:12 - error: Argument of type "int | None" cannot be assigned to parameter "key" of type "int" in function...

[BUG] Compiler crash on generator closure

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### Describe the bug Generator expressions inside cpdef who close over a variable crash the compiler. I'm assuming it's because it "hides" the closure. cli output ```python E:\3party\cython\.venv\Scripts\python.exe -m Cython.Build.Cythonize...

ccleaner: remove installed cruft

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1. Add an elevated call to `Unregister-ScheduledTask` to "post_uninstall" 2. add dependency on **gsudo** CCleaner (a.k.a. crap-cleaner) is now registering an admin privileged scheduled task that persist `scoop uninstall`, a.k.a....

`TranslationError` with user-provided regions (`--regions`) for selenocysteine proteins (TGA codon)

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# Bug Description I am annotating a Pseudomonas aeruginosa strain (BWH056) that translates the TGA codon to Selenocysteine. When I provide a pre-annotated GenBank file (using `--regions`) that contains a...

MAINT: Possible redundant code in `util.which()`

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IIUC most of https://github.com/airspeed-velocity/asv/blob/4c31edaaf82fecb28db3f93af8cfa62d6ab50fd1/asv/util.py#L200-L232 cloud be replaced with a call to `shutil.which`. Just need the `raise` semantics and temporarily fudging `os.envison['PATH'] == locations`. Is there any lore about this specific...