Run bindgen with symbols missing from opt-in list removed

[kraenhansen]

These symbols are currently generated but with @deprecated annotations. We should either adjust eslint rules to error when using deprecated methods or even better ensure the bindgen tool doesn't produce types for symbols that don't have implementation when building on CI.

See https://github.com/realm/realm-js/pull/6709#issuecomment-2153295919 for more context.