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Published 20 hours ago • verified publisher icon rdpstaff

RDP traindata not found

Open gisleDK opened this issue 9 years ago • 25 comments

Hi guys

make will fail because of missing data at rdp:

Download-traindata: [get] Getting: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] To: /home/gisle/RDPTools/classifier/build/classes/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to /home/gisle/RDPTools/classifier/build/classes/data.tgz

BUILD FAILED /home/gisle/RDPTools/classifier/build.xml:50: Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to /home/gisle/RDPTools/classifier/build/classes/data.tgz

Total time: 7 seconds make: *** [classifier/dist/classifier.jar] Error 1

Hope to hear from you soon,

Gisle Vestergaard Helmholtz Zentrum München

gisleDK avatar Aug 12 '15 09:08 gisleDK

Hi, Gisele,

Sorry for the problem. We are working to get it fixed.

Benli Chai RDP Staff

On Wed, Aug 12, 2015 at 5:02 AM, Gisle Vestergaard <[email protected]

wrote:

Hi guys

make will fail because of missing data at rdp:

Download-traindata: [get] Getting: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] To: /home/gisle/RDPTools/classifier/build/classes/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to /home/gisle/RDPTools/classifier/build/classes/data.tgz

BUILD FAILED /home/gisle/RDPTools/classifier/build.xml:50: Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to /home/gisle/RDPTools/classifier/build/classes/data.tgz

Total time: 7 seconds make: *** [classifier/dist/classifier.jar] Error 1

Hope to hear from you soon,

Gisle Vestergaard Helmholtz Zentrum München

— Reply to this email directly or view it on GitHub https://github.com/rdpstaff/RDPTools/issues/5.

RDP Staff Ribosomal Database Project Center for Microbial Ecology Michigan State University 567 Wilson Rd. Room 2225 A East Lansing, MI 48824 (517) 353-3842

rdpstaffmsu avatar Aug 12 '15 14:08 rdpstaffmsu

Hi, Gisele,

It's fixed. Let me how it works for you. Sorry for the inconvenience.

Benli

On Wed, Aug 12, 2015 at 10:02 AM, RDP Staff [email protected] wrote:

Hi, Gisele,

Sorry for the problem. We are working to get it fixed.

Benli Chai RDP Staff

On Wed, Aug 12, 2015 at 5:02 AM, Gisle Vestergaard < [email protected]> wrote:

Hi guys

make will fail because of missing data at rdp:

Download-traindata: [get] Getting: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] To: /home/gisle/RDPTools/classifier/build/classes/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.FileNotFoundException: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to /home/gisle/RDPTools/classifier/build/classes/data.tgz

BUILD FAILED /home/gisle/RDPTools/classifier/build.xml:50: Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to /home/gisle/RDPTools/classifier/build/classes/data.tgz

Total time: 7 seconds make: *** [classifier/dist/classifier.jar] Error 1

Hope to hear from you soon,

Gisle Vestergaard Helmholtz Zentrum München

— Reply to this email directly or view it on GitHub https://github.com/rdpstaff/RDPTools/issues/5.

RDP Staff Ribosomal Database Project Center for Microbial Ecology Michigan State University 567 Wilson Rd. Room 2225 A East Lansing, MI 48824 (517) 353-3842

RDP Staff Ribosomal Database Project Center for Microbial Ecology Michigan State University 567 Wilson Rd. Room 2225 A East Lansing, MI 48824 (517) 353-3842

rdpstaffmsu avatar Aug 12 '15 18:08 rdpstaffmsu

BUILD SUCCESSFUL

Thanks for the fast response.

Gisle

gisleDK avatar Aug 13 '15 07:08 gisleDK

It happens again:

download-traindata: [get] Getting: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] To: ~/WorkSpace/RDPTools/classifier/build/classes/data.tgz [get] Error opening connection java.io.IOException: Server returned HTTP response code: 502 for URL: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.IOException: Server returned HTTP response code: 502 for URL: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.IOException: Server returned HTTP response code: 502 for URL: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to ~/WorkSpace/RDPTools/classifier/build/classes/data.tgz

BUILD FAILED ~/WorkSpace/RDPTools/classifier/build.xml:50: Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to ~/WorkSpace/RDPTools/classifier/build/classes/data.tgz

Total time: 14 seconds make: *** [classifier/dist/classifier.jar] Error 1

walterxie avatar Sep 22 '15 05:09 walterxie

Hi, Gisele,

All the link work as I tested. Would you let me know the time of the day the build process failed? Thank you.

Benli

On Tue, Sep 22, 2015 at 1:21 AM, Walter [email protected] wrote:

It happens again:

download-traindata: [get] Getting: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] To: ~/WorkSpace/RDPTools/classifier/build/classes/data.tgz [get] Error opening connection java.io.IOException: Server returned HTTP response code: 502 for URL: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.IOException: Server returned HTTP response code: 502 for URL: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Error opening connection java.io.IOException: Server returned HTTP response code: 502 for URL: http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz [get] Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to ~/WorkSpace/RDPTools/classifier/build/classes/data.tgz

BUILD FAILED ~/WorkSpace/RDPTools/classifier/build.xml:50: Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to ~/WorkSpace/RDPTools/classifier/build/classes/data.tgz

Total time: 14 seconds make: *** [classifier/dist/classifier.jar] Error 1

— Reply to this email directly or view it on GitHub https://github.com/rdpstaff/RDPTools/issues/5#issuecomment-142184381.

RDP Staff Ribosomal Database Project Center for Microbial Ecology Michigan State University 567 Wilson Rd. Room 2225 A East Lansing, MI 48824 (517) 353-3842

rdpstaffmsu avatar Sep 22 '15 13:09 rdpstaffmsu

Hi Benli

My build was successful 13th of August (and I closed this thread...I thought). I do not know if walterxies problem is related.

Cheers,

Gisle

gisleDK avatar Sep 22 '15 13:09 gisleDK

Hi, Benli and Gisele,

Thank you both to follow up. The "build" is working now. And the link http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz is also working now, but which gave me "connection failure error" yesterday.

Cheers, Walter

walterxie avatar Sep 22 '15 22:09 walterxie

Hi Benli,

The link is "dead" again and the build fails (24/02/207, 1:20pm AET).

Thanks, Ido

IdoBar avatar Feb 24 '17 03:02 IdoBar

@IdoBar it should be working now

gunturus avatar Mar 06 '17 19:03 gunturus

Hi everyone, the command 'make' fails because of missing data at rdp now(27/07/2017) I guess the link is unavailable (http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz) How can I fix this??

swtama21 avatar Jul 27 '17 10:07 swtama21

@swtama21 we had a ddos attack today. It should work now.

gunturus avatar Jul 27 '17 19:07 gunturus

Hi, I tried to manually download data.tgz but transfer is stuck

$ wget -c -O data.tgz http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz
--2017-09-15 16:37:54--  http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz
Resolving rdp.cme.msu.edu (rdp.cme.msu.edu)... 35.8.164.79
Connecting to rdp.cme.msu.edu (rdp.cme.msu.edu)|35.8.164.79|:80... connected.
HTTP request sent, awaiting response... 206 Partial Content
Length: 181332714 (173M), 181318922 (173M) remaining [application/x-gzip]
Saving to: ‘data.tgz’

data.tgz                                          0%[                                                                                                        ]  41.08K  --.-KB/s   eta 19d 12h

ycl6 avatar Sep 15 '17 08:09 ycl6

Would you like to try downloading with a web browser?

Sent from my iPhone

On Sep 15, 2017, at 4:43 AM, I-Hsuan Lin [email protected] wrote:

Hi, I tried to manually download data.tgz but transfer is stuck

$ wget -c -O data.tgz http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz --2017-09-15 16:37:54-- http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz Resolving rdp.cme.msu.edu (rdp.cme.msu.edu)... 35.8.164.79 Connecting to rdp.cme.msu.edu (rdp.cme.msu.edu)|35.8.164.79|:80... connected. HTTP request sent, awaiting response... 206 Partial Content Length: 181332714 (173M), 181318922 (173M) remaining [application/x-gzip] Saving to: ‘data.tgz’

data.tgz 0%[ ] 41.08K --.-KB/s eta 19d 12h — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or mute the thread.

chaibenl avatar Sep 15 '17 13:09 chaibenl

@chaibenl I leave wget -c for a couple of hours then at the 7th retry the download suddenly is completed.

ycl6 avatar Sep 15 '17 13:09 ycl6

Hello. I have the similar problem when I did it with "make" command:

BUILD FAILED /Users/phycolab/Desktop/RDPTools/classifier/build.xml:51: Error while expanding /Users/phycolab/Desktop/RDPTools/classifier/build/classes/data.tgz java.io.EOFException: Unexpected end of ZLIB input stream at java.util.zip.InflaterInputStream.fill(InflaterInputStream.java:240) at java.util.zip.InflaterInputStream.read(InflaterInputStream.java:158) at java.util.zip.GZIPInputStream.read(GZIPInputStream.java:117) at org.apache.tools.tar.TarBuffer.readBlock(TarBuffer.java:253) at org.apache.tools.tar.TarBuffer.readRecord(TarBuffer.java:220) at org.apache.tools.tar.TarInputStream.read(TarInputStream.java:603) at java.io.FilterInputStream.read(FilterInputStream.java:107) at org.apache.tools.ant.taskdefs.Expand.extractFile(Expand.java:357) at org.apache.tools.ant.taskdefs.Untar.expandStream(Untar.java:154) at org.apache.tools.ant.taskdefs.Untar.expandFile(Untar.java:108) at org.apache.tools.ant.taskdefs.Expand.execute(Expand.java:157) at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292) at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106) at org.apache.tools.ant.Task.perform(Task.java:350) at org.apache.tools.ant.Target.execute(Target.java:448) at org.apache.tools.ant.Target.performTasks(Target.java:469) at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399) at org.apache.tools.ant.Project.executeTarget(Project.java:1370) at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41) at org.apache.tools.ant.Project.executeTargets(Project.java:1260) at org.apache.tools.ant.Main.runBuild(Main.java:849) at org.apache.tools.ant.Main.startAnt(Main.java:228) at org.apache.tools.ant.launch.Launcher.run(Launcher.java:283) at org.apache.tools.ant.launch.Launcher.main(Launcher.java:101)

Total time: 4 minutes 49 seconds make: *** [classifier/dist/classifier.jar] Error 1

sbombin avatar Apr 20 '18 15:04 sbombin

Hello,

I'm getting the same error message:

BUILD FAILED /RDPTools/classifier/build.xml:50: Can't get http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz to /RDPTools/classifier/build/classes/data.tgz

Total time: 2 seconds Makefile:24: recipe for target 'classifier/dist/classifier.jar' failed make: *** [classifier/dist/classifier.jar] Error 1

abenaa07 avatar Apr 27 '18 17:04 abenaa07

I'm on the same error. And when accessing http://rdp.cme.msu.edu/download/rdpclassifiertraindata/data.tgz from web browser, I got an error "RDP :: Page Not Found".

komorihi avatar May 02 '18 02:05 komorihi

@rdpstaffmsu I am also having this problem.

dacb avatar May 03 '18 19:05 dacb

Thank you for noticing the problem. We have two servers running RDP. One of the servers didn't have the file. We now have the servers mirrored and you will be download the file.

thank you for noticing the problem

gunturus avatar May 04 '18 14:05 gunturus

Hi,

I've been having the same pb for a few hours. Do you have an idea when the server will be up again?

Maybe having the training data also stored in a completely different server, by another organization, could help when your server is down. But you would also need a way to set the compiler to get the data on this other server.

Thanks in advance.

Cheers, Pierre

ppericard avatar Jul 22 '19 20:07 ppericard

HI Pierre,

I have restarted the website. We have been getting unpredictable tomcat server crashes. Can you try it now.

Santosh

gunturus avatar Jul 22 '19 21:07 gunturus

Yep. It works now! Thank you ^^

ppericard avatar Jul 22 '19 21:07 ppericard

Hi, I'm having the same problem.

stav3eyal avatar Feb 16 '22 12:02 stav3eyal

same problem. Running make command on 7:18 p.m. Friday, January 12, 2024

Can the data.tgz made available?

kumarpatel avatar Jan 12 '24 19:01 kumarpatel

Same problem here as of 14/05/2024

cebercoto avatar May 14 '24 07:05 cebercoto