importing failed

[aminemosbah]

hi i get this when trying to run the tutorial, what to we need to install rdkit in google collab ? thinks ImportError Traceback (most recent call last) in () 1 import pandas as pd ----> 2 from rdkit import Chem 3 from rdkit.Chem import PandasTools 4 from rdkit.Chem.Draw import IPythonConsole 5

ImportError: cannot import name 'Chem'

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NOTE: If your import is failing due to a missing package, you can manually install dependencies using either !pip or !apt.

To view examples of installing some common dependencies, click the "Open Examples" button below.

[jw-feng]

Try installing RDKit with the following:

!wget -c https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh !chmod +x Miniconda3-latest-Linux-x86_64.sh !bash ./Miniconda3-latest-Linux-x86_64.sh -b -f -p /usr/local !conda install -q -y -c conda-forge rdkit

Then append rdkit path to current python system path.

import sys sys.path.append('/usr/local/lib/python3.7/site-packages/')

On Sat, Feb 22, 2020 at 4:23 AM aminemosbah [email protected] wrote:

hi i get this when trying to run the tutorial, what to we need to install rdkit in google collab ? thinks ImportError Traceback (most recent call last) in () 1 import pandas as pd ----> 2 from rdkit import Chem 3 from rdkit.Chem import PandasTools 4 from rdkit.Chem.Draw import IPythonConsole 5

ImportError: cannot import name 'Chem'

NOTE: If your import is failing due to a missing package, you can manually install dependencies using either !pip or !apt.

To view examples of installing some common dependencies, click the "Open Examples" button below.

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[aminemosbah]

Are you sure this is the way to go with google collab ? I m trying to run rdkit on the cloud not on the local device

[jw-feng]

Yes, see this example that was posted on the Rdkit discussion forum. https://colab.research.google.com/drive/1nQPmdEbYQgVsFr7c44yRd3wpXPEsJar3

This is what worked for me. I tried installing RDKit with apt-get on colab but that resulted in an error trying to import Chem.

JW

On Feb 23, 2020, at 4:46 AM, aminemosbah [email protected] wrote:

 Are you sure this is the way to go with google collab ? I m trying to run rdkit on the cloud not on the local device

— You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

[aminemosbah]

Thanks that’s fine

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From: JW Feng [email protected] Sent: Sunday, February 23, 2020 5:42:59 PM To: rdkit/rdkit-tutorials [email protected] Cc: aminemosbah [email protected]; Author [email protected] Subject: Re: [rdkit/rdkit-tutorials] importing failed (#9)

Yes, see this example that was posted on the Rdkit discussion forum. https://colab.research.google.com/drive/1nQPmdEbYQgVsFr7c44yRd3wpXPEsJar3

This is what worked for me. I tried installing RDKit with apt-get on colab but that resulted in an error trying to import Chem.

JW

On Feb 23, 2020, at 4:46 AM, aminemosbah [email protected] wrote:

 Are you sure this is the way to go with google collab ? I m trying to run rdkit on the cloud not on the local device

— You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

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