Romain Derelle

Dear John, Short answer: I'm afraid such option isn't available. Firstly, Broccoli is not compatible with Blast, which has a different cigar output format, and can only be ran with...

I might have a suggestion regarding the fast mode (codename: 'flyover'): (1) to parse the first fastq file and only extract kmers from 1 read every 20 reads. (2) at...

The minimisers approach seems simpler to implement but, for the sake of the discussion (I'm not advocating against it), it might suffer from two caveats: _ you might need to...

If the Nanopore reads correspond to the last chemistry version (>99% accuracy), SKA2 might work from raw reads. One option would be to lower the min-count threshold when using the...

Here is the coverage histogram