Raymond Cavalcante

Thanks for bringing this up. It is a bit odd; when I reach into the TxDb object for hg38 and extract the transcript with Ensembl transcript ID ENST00000580062.5 I get:...

It seems we've reached the end of the road for the URLs being stable and accessible, and this is causing failure on the Bioconductor build machines as well. I'll be...

I didn't have this problem on a fresh install. I think this is actually a transient issue. I was able to build hg19, hg38, and mm10 lncRNA resources.

Moreover, I have been able to build the CpG island annotations that were also mentioned in this thread.

Thanks for requesting this. It looks like the supporting Bioconductor database packages are in place for rn7, so I can add support in the next couple weeks between work obligations....

Agree with previous commenter.

I have not been able to reproduce this issue.

In the end, all annotatr truly needs for a set of annotations is a GenomicRanges object with some particular columns. - id: a unique identifier per annotaiton, of your choice...

FWIW, all the lncRNA built-ins seem to be working fine.

Hi, Thank you for the kind words. You're on the right track to use `makeTxDbFromGFF`, in fact, I've done that before for custom annotations on novel genomes. Perhaps the code...