Fail to compiling on HDF5

[yifanfu01]

Hi , I used HPC (Linux without Root access) now and my hdf5 lib is not installed in standard path. So how could i specific the hdf5 lib i use? When installing, i met the error:

sh: line 1: 26928 Aborted                 R_TESTS= '/public/software/apps/R-4.3.1/lib64/R/bin/R' --no-save --no-restore --no-echo 2>&1 < '/tmp/Rtmpx00VSA/file5eef71fbd144'
Warning! ***HDF5 library version mismatched error***
The HDF5 header files used to compile this application do not match
the version used by the HDF5 library to which this application is linked.
Data corruption or segmentation faults may occur if the application continues.
This can happen when an application was compiled by one version of HDF5 but
linked with a different version of static or shared HDF5 library.
You should recompile the application or check your shared library related
settings such as 'LD_LIBRARY_PATH'.
You can, at your own risk, disable this warning by setting the environment
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
Setting it to 2 or higher will suppress the warning messages totally.
Headers are 1.10.7, library is 1.12.0
            SUMMARY OF THE HDF5 CONFIGURATION
            =================================

and finally error:

Features:
---------
                   Parallel HDF5: no
Parallel Filtered Dataset Writes: no
              Large Parallel I/O: no
              High-level library: yes
                Build HDF5 Tests: yes
                Build HDF5 Tools: yes
                    Threadsafety: no
             Default API mapping: v112
  With deprecated public symbols: yes
          I/O filters (external): deflate(zlib)
                             MPE: no
                   Map (H5M) API: no
                      Direct VFD: no
              (Read-Only) S3 VFD: no
            (Read-Only) HDFS VFD: no
                         dmalloc: no
  Packages w/ extra debug output: AC,B2,CX,D,F,HL,I,O,S,ST,T,Z
                     API tracing: yes
            Using memory checker: no
 Memory allocation sanity checks: yes
          Function stack tracing: no
       Strict file format checks: yes
    Optimization instrumentation: no
Bye...
ERROR: lazy loading failed for package ‘DropletUtils’

thanks in advance

[rcastelo]

Hi, could you clear up what is the relationship of this problem with GSVA?