Raymond Lee
Raymond Lee
Aren't there two enzymes involved? 
@pgaudet Can we have two-step (two-enzyme) process in MF?
> Can you tell me where that figure is from? https://chem.libretexts.org/Courses/Brevard_College/CHE_301_Biochemistry/09%3A_Metabolism_of_Lipids/9.03%3A_Glycerol_Metabolism Also good figures in PMID:30883020. > If you can formulate the pathway that 'GO:0061610 glycerol to glycerone phosphate metabolic...
@pgaudet Should I close this ticket or proceed with obsoletion?
GO:0061610 glycerol to glycerone phosphate metabolic process == 'metabolic process' and ('starts with' some 'glycerol kinase activity') and ('ends with' some 'glycerol-3-phosphate dehydrogenase (NAD+) activity') and ('has primary input' some...
https://en.wikipedia.org/wiki/Glycerol_phosphate_shuttle  Make the LD more complete. glycerophosphate shuttle == 'metabolic process' and ('has part' some 'glycerol-3-phosphate dehydrogenase (quinone) activity') and ('has part' some 'glycerol-3-phosphate dehydrogenase (NAD+) activity') and ('has...
+[Term] +id: GO:0160163 +name: S-nitrosoglutathione reductase (NADPH) activity +namespace: molecular_function +def: "Catalysis of the reaction: H(+) + NADPH + S-nitrosoglutathione = NADP(+) + sulfinamide glutathione." [RHEA:63500] +xref: EC:1.1.1.284 {source="skos:broadMatch"} +xref:...
As it stands, all children of GO:0098803 respiratory chain complex are inferred. I added a relationship: proton-transporting ATP synthase complex part_of repirasome. The resulting hierarchy looks like: ![Screenshot from 2024-05-15...
> My main proposal here is to obsolete all of the mitochondrial/chloroplast/bacterial ('plasma membrane')-specific complexes that are included under the headings shown in your Protege screenshot. I'm not sure if...
@ValWood These terms respiratory chain complex I, mitochondrial respiratory chain complex I have a taxon constraint never_in_taxon 'Schizosaccharomyces pombe' and 'Saccharomyces cerevisiae'. Is that an error?