spladder
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ratschlab
Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
Hi, I was running spladder build with --psi-min-reads set to 10, which is also the default value. But when this value is specified in the command line, the execution fails...
* spladder version:3.0.4 * Python version:3.8.15 * Operating System:CentOS ### Description I was trying to optimize a run a large cohort by using the "--chunked-merge" mechanism. I first generated the...
* spladder version: 3.0.3 * Python version: 3.9.13 * Operating System: rhel7.9 ### Description We have previously run spladder on a cohort using the [recommended documentation](https://spladder.readthedocs.io/en/latest/spladder_cohort.html#), and built a prediction...
* spladder version: 3.0.4 * Python version: 3.10 * Operating System: Linux ### Description I am trying to use "viz" to generate graphs for my samples. ### What I Did...
* spladder version: 3.0.3 * Python version: 3.10.5 * Operating System: Linux ### Description First thanks so much for your work on this great tool! I've been attempting to identify...
* spladder version: 3.0.2 * Python version: 3.9.5 * Operating System: CentOS 7 ### Description I am trying to visualize splicing using the spladder viz command. However, I only get...
* spladder version:3.0.1 * Python version:3.6 * Operating System:CentOS ### Description I use spladder to detect splicing events in one sample with bam file, The command is: spladder build --parallel...
Hi, I have successfully run the differential splicing analysis using spladder, but I need some help with interpreting certain columns in the output file : test_results_C{C}_{ET}.tsv 1. What does the...
Naming of skipped exons in mutually exclusive events is based on exon length not genomic coordinates
* spladder version: 3.0.3 * Python version: 3.10.6 * Operating System: Ubuntu Thank you Andre for this very useful tool. I have a question about the naming of the skipped...
* spladder version: 3.0.3 * Python version: 3.9.6 * Operating System: Linux - CentOS 7 I have a large amount of samples (101) and I'm trying to run the build...
