Sebastian Raschka comments

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                                            Sebastian Raschka

Visualizing Transformer based on your notebook

Wow that's pretty cool! The blog looks really nice. The 3D website doesn't show correctly in my browser though (tried Safari and Chrome. Do you know what's going on? )

Setup dev environment

Thanks! As a non-poetry user (I am in the conda-camp), could you add brief instructions for how to use this?

Setup dev environment

Totally missed that, sorry! And this is totally awesome. Many thanks!

Batch vs layer normalization description (page 560)

Thanks for the note! Phew this is a tricky one Originally: ![Screen Shot 2022-04-14 at 11 01 18 PM](https://user-images.githubusercontent.com/5618407/163516199-1c1f7f0b-1ed0-4e68-9673-6996b4194928.png) > While layer normalization is traditionally performed across all elements in...

problems install using pip and setup.py

I need to make a new PyPI version some time. Seems like things have changed in the setup.py requirements compared to ~5 years ago :). For now, you can install...

Coral_loss importance_weights

Hi there, We didn't include the last rank due to redundancy. E.g., if you have the 5 classes 0, 1, 2, 3, 4. The 4 tasks are then p(y >...

Biopandas PDB output formatting leads to a ton of segments when reading with MDAnalysis: reason and my quick fix

Thanks for the note, I think I've heard about this issue before. I think there was a similar issue with the atom number that I fixed many years ago. I...

Stream support for exporting pdbs

Wow, thanks @a-r-j . If this works for you @djberenberg , it'd be great to add this to biopandas as a PR :)

Add mmCIF -> PDB conversion

Thanks for adding that! For the test, just curious, does this happen with other structures as well?

Add mmCIF -> PDB conversion

Hmm... I think that we could have it without the TER records and just a note about that in the docs for now. So that people are aware. Otherwise, inferring...